Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0286
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 41 2e-04
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 40 3e-04
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 34 0.019
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 34 0.019
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 33 0.033
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 32 0.100
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 31 0.23
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 29 0.93
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 29 0.93
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 28 1.6
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 1.6
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 27 2.1
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 27 2.1
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 27 2.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 3.8
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 5.0
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 5.0
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 5.0
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 5.0
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar... 26 5.0
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 26 6.6
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 8.7
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 25 8.7
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 260 YPCPM--CNKGYPTKEAMQDHFNYQHLGKTAHKCPVCEKPIASRANVVKHVMRVHGEKKE 433
Y CPM C K + A++ H + H G A C C + + +H+ R +K
Sbjct: 236 YHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTCKKAH 295
Query: 434 KPRNHACGM 460
KP + CG+
Sbjct: 296 KPYINECGI 304
Score = 35.1 bits (77), Expect = 0.011
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +3
Query: 9 CKKTFVNKSTLVTHLKLHDGPLPRDE---CPI--CHK-MVRSTQLKYHVQR-HKSKSRYE 167
C + F + L H+ LH L + CP+ C K RS+ LK H+ H+ +
Sbjct: 209 CGRQFKTAAHLRHHVVLHQTTLEERKTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFH 268
Query: 168 CEECNKVFSHLATYQAHLK 224
C+ C F + Q HL+
Sbjct: 269 CDSCGTKFGYKHMLQRHLE 287
Score = 33.9 bits (74), Expect = 0.025
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Frame = +2
Query: 236 ARHRASLKYPCPM--CNKGYPTKEAMQDHFNYQHLGKTAHKCPVCEKPIASRANVVKHVM 409
A H L YPC C + TK+ +Q+H N H ++ CP E + +
Sbjct: 136 ACHTHLLPYPCTYQDCELRFATKQKLQNHVNRAHEKIISYSCP-HESCVGHEGFEKWSQL 194
Query: 410 RVHGEKKEKPRNHACGMCRKRFTDKKALTQHEV 508
+ H + P +C +C ++F L H V
Sbjct: 195 QNHIREAHVP---SCSICGRQFKTAAHLRHHVV 224
Score = 31.9 bits (69), Expect = 0.100
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 511 HSRERPLTCDI--CQQTFKQKASLYTHKKTVHKVVP 612
HS ERP CD C + F +K+ L HK+ V P
Sbjct: 47 HSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKP 82
Score = 28.7 bits (61), Expect = 0.93
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +3
Query: 3 DHCKKTFVNKSTLVTHLKLH--DGPLPRDECPICHKMVRSTQLKYHVQRHKSKSRYEC-- 170
+ C K + S L HL+ H + P D R + LK H + H + + C
Sbjct: 28 EECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKRCHTNVKPFSCHY 87
Query: 171 EECNKVFSHLATYQAHLKYAR 233
+ C+ F + H++ R
Sbjct: 88 DGCDAQFYTQQHLERHIEVHR 108
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Frame = +3
Query: 3 DHCKKTFVNKSTLVTHLKLHDGPLPR----DECPICHKMVRSTQLKYHVQR-HKSKSRYE 167
D C F + L H+++H P P + C C + QL+ H+ H Y
Sbjct: 88 DGCDAQFYTQQHLERHIEVHRKPKPYACTWEGCDECFS--KHQQLRSHISACHTHLLPYP 145
Query: 168 C--EECNKVFSHLATYQAHLKYARAH 239
C ++C F+ Q H+ RAH
Sbjct: 146 CTYQDCELRFATKQKLQNHVN--RAH 169
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 9 CKKTFVNKSTLVTHLKLHDGPLPRDECPICHK-MVRSTQLKYHVQRHKSKSRYECEECNK 185
C K F L +H+ H P +C IC K R + H Q H + C CN+
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPF-QCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQ 635
Query: 186 VFSHLATYQAHLK 224
F+ + H K
Sbjct: 636 RFARMDALNRHYK 648
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = +2
Query: 275 CNKGYPTKEAMQDHFNYQHLGKTAHKCPVCEKPIASRANVVKHVMRVHGEKKEKPRNHAC 454
CNK + ++ H N H +C +C+K A + H R H + + AC
Sbjct: 577 CNKRFTRAYNLKSHMN-THTNYRPFQCSICKKSFARQ-----HDKRRHEQLHTGIKAFAC 630
Query: 455 GMCRKRFTDKKALTQHEVSTPGR 523
C +RF AL +H S G+
Sbjct: 631 VTCNQRFARMDALNRHYKSEVGQ 653
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +1
Query: 496 SARGVHSRERPLTCDICQQTFKQKASLYTHKK 591
S H+ RP C IC+++F ++ H++
Sbjct: 589 SHMNTHTNYRPFQCSICKKSFARQHDKRRHEQ 620
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 34.3 bits (75), Expect = 0.019
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +2
Query: 344 AHKCPVCEKPIASRANVVKHVMRVHGEKKEKPRNHACGMCRKRFTDKKALTQH 502
+++CP C++ + + V+H+ GEK P + C+KRFT + L +H
Sbjct: 3 SYECPFCKRVFHRQEHQVRHIRSHTGEK---PFECSYPSCKKRFTRRDELIRH 52
Score = 32.7 bits (71), Expect = 0.057
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +3
Query: 9 CKKTFVNKSTLVTHLKLHDGPLPRDEC--PICHK-MVRSTQLKYHVQRHKSKSRYECEEC 179
CK+ F + V H++ H G P EC P C K R +L HV+ H K+ E+
Sbjct: 9 CKRVFHRQEHQVRHIRSHTGEKP-FECSYPSCKKRFTRRDELIRHVRTHLRKALVTPEQT 67
Query: 180 NKVFSHLA 203
V H A
Sbjct: 68 LDVNLHKA 75
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 34.3 bits (75), Expect = 0.019
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 347 HKCPVCEKPIASRANVVKHVMRVHGEKKEKPRNHACGM--CRKRFTDKKALTQH-EVSTP 517
+KCP+C K + +H+ R H EKP H C C KRF+ LT+H + T
Sbjct: 26 YKCPLCTKAFYRLEHQTRHI-RTH--TGEKP--HVCTFPGCAKRFSRSDELTRHARIHTN 80
Query: 518 GRGR*PATSA 547
R A +A
Sbjct: 81 ANSRRNAAAA 90
Score = 33.9 bits (74), Expect = 0.025
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = +2
Query: 260 YPCPMCNKGYPTKEAMQDHFNYQHLGKTAHKC--PVCEKPIASRANVVKHVMRVHGEKKE 433
Y CP+C K + E H H G+ H C P C K + + +H R+H
Sbjct: 26 YKCPLCTKAFYRLEHQTRHIR-THTGEKPHVCTFPGCAKRFSRSDELTRHA-RIHTNANS 83
Query: 434 KPRNHA 451
+ RN A
Sbjct: 84 R-RNAA 88
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 33.5 bits (73), Expect = 0.033
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 335 GKTAHKCPVCEKPIASRANVVKHVMRVHGEKKEKPRNHACGMCRKRFTDKKALTQHE 505
G + CP C K ++ +H+ +H EKP C +C KRF+ + L QHE
Sbjct: 419 GGKSFVCPECSKKFKRSEHLRRHIRSLH--TSEKP--FVC-ICGKRFSRRDNLRQHE 470
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 260 YPCPMCNKGYPTKEAMQDHFNYQHLGKTAHKCPVCEKPIASRANVVKHVMRVH 418
+ CP C+K + E ++ H H + C +C K + R N+ +H R+H
Sbjct: 423 FVCPECSKKFKRSEHLRRHIRSLHTSEKPFVC-ICGKRFSRRDNLRQH-ERLH 473
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 31.9 bits (69), Expect = 0.100
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +2
Query: 260 YPCPMCNKGYPTKEAMQDHFNYQHLGKTAHKCPVCEKPIASRANVVKHVMRVHGEK 427
+PC C K + E + H H CP CE + + +H+ R H +K
Sbjct: 31 FPCDQCAKRFTRHENLTRH-KACHSKAEPIPCPYCEIKCKRKDLLKRHIQRFHNDK 85
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 431 EKPRNHACGMCRKRFTDKKALTQHE 505
+ R C C KRFT + LT+H+
Sbjct: 26 DSKRVFPCDQCAKRFTRHENLTRHK 50
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 75 PRDEC--PICHK-MVRSTQLKYHVQRHKSKSRYECEECNKVFSHLATYQAHLK 224
PR C P C K R L+ H + H++ + C CN+ F+ H++
Sbjct: 24 PRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQ 76
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +2
Query: 197 PRDLPGAPQVRQGARHRASLK-YPCPMCNKGYPTKEAMQDHFNYQHLGK 340
P+ +R+ R ++K + C CN+ + + + H HL K
Sbjct: 34 PKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQK 82
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 0.93
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 96 CHKMV-RSTQLKYHVQRHKSKSRYECEECNKVFSHLATYQAHLK 224
C+K + R ++ H+Q H S Y C+ C F + HL+
Sbjct: 450 CNKRIARKYNVESHIQTHLSDRPYRCDLCKAGFVRHHDLKRHLR 493
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +3
Query: 3 DHCKKTFVNKSTLVTHLKLHDGPLPRDECPICHKMVRSTQLKYHVQRH 146
D CK FV L HL++H+ P C + R L H QR+
Sbjct: 476 DLCKAGFVRHHDLKRHLRIHENGRPY-VCECLKRFNRLDALNRHKQRN 522
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 511 HSRERPLTCDICQQTFKQKASLYTHKKTVHK 603
H +RP CD+C+ F + L H + +H+
Sbjct: 467 HLSDRPYRCDLCKAGFVRHHDLKRHLR-IHE 496
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 28.7 bits (61), Expect = 0.93
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 535 CDICQQTFKQKASLYTHKKTVHKV 606
CD C F +++ L HK+T H+V
Sbjct: 141 CDKCDMMFVKQSGLTNHKRTYHQV 164
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 150 SKSRYECEECNKVFSHLATYQAHLKYARAH 239
S + CE C K F + ++AH K ++AH
Sbjct: 239 STEAFYCEVCQKFFGKITVFEAH-KKSKAH 267
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +2
Query: 74 TAGRVPDMPQDGEVHATEVPRPEAQEQEPVRVRGVQQGVLPPRDLPGAPQVRQGAR 241
T ++ +P++ ++ T+ + + R RG++ G + D P P QGAR
Sbjct: 762 TGNKMVTIPKENLLYTTKTGELISYTEFIERSRGIRPGSISTADGPNVPNWAQGAR 817
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 598 HKVVPNKKVVEFIEATALEMFPGTSPRLGSFARKAXGPHSG 720
+KV+P+++++ + +F P GSF+R A SG
Sbjct: 416 YKVIPDQELIAMGATNLIGVFFHAYPATGSFSRSAINAKSG 456
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -1
Query: 622 LSCWARLCGPSSCACKERPSA*RFVGRCRRSAASPGSGHLVLSQSLLV 479
L CW+ L + +RPS+ F+ R +++P +++S LL+
Sbjct: 2 LDCWSWLNSLADATFGKRPSSFEFIVNKTRFSSAPVVATIIISYYLLI 49
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 84 ECPICHKMVRSTQLKYHVQRHKSKSRYECEECNKVFSHLATYQAHLK 224
+CP+C K V + H+ H S S + + F Y+ HL+
Sbjct: 8 QCPVCAKTVTMNDINPHLDSHYSDSSGPSKPVSPFFKK-ERYKHHLE 53
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/82 (25%), Positives = 33/82 (40%)
Frame = +2
Query: 257 KYPCPMCNKGYPTKEAMQDHFNYQHLGKTAHKCPVCEKPIASRANVVKHVMRVHGEKKEK 436
K P P C+K Y + ++ H + H P PI + VV++ K
Sbjct: 351 KCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPA---PIPHQGFVVEN----------K 397
Query: 437 PRNHACGMCRKRFTDKKALTQH 502
P + C +C KR+ + L H
Sbjct: 398 P--YRCEVCSKRYKNLNGLKYH 417
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 268 PDVQQGLPDEGSDAGPLQLPAPGEDGA 348
P + GLP+E + G + P P DGA
Sbjct: 426 PSLFAGLPEEDVNTGSSETPVPYYDGA 452
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 5.0
Identities = 8/31 (25%), Positives = 15/31 (48%)
Frame = +2
Query: 242 HRASLKYPCPMCNKGYPTKEAMQDHFNYQHL 334
H S + CP C+ + + + H N +H+
Sbjct: 41 HTNSKAFICPHCSSSFTRSDVLNRHVNQKHV 71
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = +3
Query: 48 HLKLHDGPLPRDECPICHKMVRSTQLKYHVQRHKSKSRYECEECNKVFSHLATYQAHL 221
+LK LP + + S Q + + K++ CE CNK F Y +H+
Sbjct: 32 NLKRKVASLPPLSAEVFAGKILSIQKQNEEVQKKAEFYQNCEVCNKKFYSEGAYSSHM 89
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +3
Query: 84 ECPICHKMVRSTQLKYHVQRHKSKSRYECEECN 182
EC ICH+ + LK ++ + ++ C C+
Sbjct: 1111 ECEICHEWYHAKCLKMSKKKLRQDEKFTCPICD 1143
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 522 LPGVDTSC*VRAFLSVNRFLHIPQAWFLG 436
+ G D +C +R N+FL++P FLG
Sbjct: 344 ISGSDKACVLRMVWVFNKFLYLPLITFLG 372
>SPBC2F12.11c |rep2||transcriptional activator
Rep2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 219
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 529 LTCDICQQTFKQKASLYTHKKTVHKVVPNKKVVEFIE 639
L C C TF +L H+ T VP K F+E
Sbjct: 175 LICSKCNTTFNHSTALMMHEATCLNQVPFKLSDFFVE 211
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 98 PQDGEVHATEVPRPEAQEQEPVRVRGVQQGVLPPRDLPG-APQVRQGARHRASLKYPCPM 274
P + E ++ P P Q+P+ +R +Q V+PPR PG P + R +A +K P P
Sbjct: 7 PSEVEKSSSASPAP----QKPM-IRVSKQWVVPPRPKPGRKPALDALGRRKAPIK-PRPG 60
Query: 275 CNKGYPTKEA 304
+EA
Sbjct: 61 PTSALSVEEA 70
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +2
Query: 266 CPMCNKGYPTKEAMQDHFNYQH 331
CP+C P A+ DH + H
Sbjct: 41 CPICGLELPNLSALNDHLDVTH 62
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 90 PICHKMVRSTQLKYHVQRHKSKSRYECEECNKVFSHLATYQAH 218
P + + L +H S+SR+ C C K F ++ Q H
Sbjct: 396 PSKRRHIDDADLVFHSSPLLSRSRFICCYCTKPFLSISKLQEH 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,778,662
Number of Sequences: 5004
Number of extensions: 52340
Number of successful extensions: 202
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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