Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0285
         (815 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.3  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    24   1.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    24   1.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   6.7  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   8.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   8.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 522  PQQPEVFLYSPTEESKSFNIETPTSDISQIN 614
            P  P++ L S T  S +F ++   SD+  I+
Sbjct: 1397 PHAPQIALTSTTTNSLTFKLKPHESDVEPIH 1427


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/56 (21%), Positives = 20/56 (35%)
 Frame = +2

Query: 95  NMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPRIP 262
           N  Y++ N+   +      EL    +     E CD    P C  P    + +  +P
Sbjct: 442 NDVYFVTNLQVIQWMQNPTELNGLRDFQEWKEKCDIKGQPYCSLPNSCALTTRELP 497


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/56 (21%), Positives = 20/56 (35%)
 Frame = +2

Query: 95  NMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPRIP 262
           N  Y++ N+   +      EL    +     E CD    P C  P    + +  +P
Sbjct: 449 NDVYFVTNLQVIQWMQNPTELNGLRDFQEWKEKCDIKGQPYCSLPNSCALTTRELP 504


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 212 PICEDPEQDVIVSPR 256
           P CE+PE +++VS +
Sbjct: 14  PECENPETELLVSTK 28


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 805 ATGWSSVPVFPIPSTVF 755
           A GW+   VF  P T F
Sbjct: 159 ALGWAPTNVFTFPETQF 175


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 448 QPSNIKVESPKFRPNNLYMNIPVSCRNNQKCSCTHPRKNP 567
           QP+  +  +  ++P     N+      NQ  SCTH  +NP
Sbjct: 339 QPTPSQSPNQIYQPVTNLTNLTYPSYYNQDVSCTH-YQNP 377


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,982
Number of Sequences: 336
Number of extensions: 3675
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)