Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0285
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 36 0.007
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.60
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 1.0
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 28 1.4
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 2.4
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 3.2
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 3.2
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 27 3.2
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 27 3.2
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar... 27 4.2
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 5.6
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 7.4
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 7.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 7.4
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 9.7
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 25 9.7
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 25 9.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.7
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 394 HDDTADRIQQAIENDYLFQPSNIKVESPKFRPNNL-YMNIPVSCRNNQKCSCTHPRKNPN 570
H T + +I FQP + ES N+ + N+P S +Q + HP K P+
Sbjct: 262 HSTTPISLSNSIAPSLSFQPKKARYESANVSFNDTSFTNVPTSSPLHQSTTANHPEKTPS 321
Query: 571 RS 576
R+
Sbjct: 322 RA 323
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.5 bits (63), Expect = 0.60
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 131 EKQDKTEELESKEEDL-RIIETCDTVDSPICEDPEQDVIVSPRIPSAK 271
EK++ +LESKEE + R + + SP+ E P Q + P IP K
Sbjct: 166 EKKESKVKLESKEEKISRNLRSSSRSISPVTEQP-QSPKIQPVIPEKK 212
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 122 SDNEKQDKTEELESKEEDLRIIETCDTVDSPI 217
SD+ +Q T L S + +ETC+TVD I
Sbjct: 112 SDSTQQPPTNTLPSVSASSQSVETCETVDEDI 143
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 131 EKQDKTEELESKEEDLRIIETCDTVD 208
E +DK EE ESKE D++ ET D+++
Sbjct: 479 ETEDKVEETESKEADVKAKET-DSIE 503
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 20 DLARDFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDL 178
D+A DF AD+ +D SN + L+N+S++ + LE+ E++
Sbjct: 251 DIASDFFSSPSADLEADDFTTLNNSNAGHLLQNLSNDNVSVSVKALENGNEEV 303
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 32 DFKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDS 211
D ++ +L++ LS +++S F N YY N K K S E+ ++ + DTV S
Sbjct: 171 DERNNQLSEALS-MLRLSPFVNNYY---PSYQNRKDGK-----SLMENRGVVLSVDTVTS 221
Query: 212 PICEDPEQ 235
PI + P++
Sbjct: 222 PISQSPKK 229
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 427 IENDYLFQPSNIKVESPKFRPN-NLY--MNIPVSCRNNQKCSCTHPRKNPNRSTLK 585
I+N+ + E P F P +LY N+P + S T P++NPN S L+
Sbjct: 108 IQNEQTNPKQLLLAEDPAFIPEVSLYDAFNLPSVDLHVDMSSFTQPKENPNISVLE 163
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 3.2
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +1
Query: 277 TQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIENDYLFQPS 456
T+ ++E +N D S+ S V ++ +N + D+ + Q IE D L
Sbjct: 877 TELIDEAEENIDISQDISMTETNA--VDDEVQAENSI-LQDEVEETRQDDIEKDELEDIK 933
Query: 457 NIKVESPKFRPNNLYMNIP---VSCRNNQKCSCTHPRKNPNRSTLKRQLVILV 606
+K E + IP + ++ ++CSC + +N N +T ++ V
Sbjct: 934 EVK-EDENLTTLEETIEIPANDIEVQDPEQCSCMNSTENDNITTENSSEIVQV 985
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Frame = +1
Query: 253 PDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVK----EQQLYQNELPCHDDTADRI- 417
PD T NL +S NSD+S L K ++++ + P + ++I
Sbjct: 136 PDTTRRNSTSNLSSVSTNSDKSRTIGSNYNMLQSTKSTASQRRMSDSSTPSTTKSKEKIF 195
Query: 418 -QQAIENDYLFQPSNIKVESPKFRP 489
+A+ + SN+ ESP +P
Sbjct: 196 SPKALSSPTQGASSNVTPESPPEKP 220
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 370 LYQNELPCHDDTADRIQQAIENDYLFQPSNIKVESPK 480
LY +E PC D + + + +EN+ +P N+ V+S K
Sbjct: 137 LYVSECPCGDASMELLASRLENN---KPWNLTVDSEK 170
>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 533 WLLRHETGIFIYKLFGLNFGLSTLIFD 453
WL H G L GL+FG+ T+ F+
Sbjct: 278 WLTGHSLGGATAALMGLSFGIPTVTFE 304
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 242 IVSPRIPSAKRARKIWKKFLITLMNPKSNLVRRS 343
IVS RIPS K A + + ++ L P+S + R++
Sbjct: 499 IVSDRIPSLKFAIRAAETYISNLKTPRSLISRKA 532
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 122 SDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPE 232
SDNE + +++ ++ ED++I ET V PE
Sbjct: 212 SDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPE 248
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 301 DNSDESEKQSRASFKLPKVKEQQLYQNELP--CHDDTADR 414
DNS+ E +++ +FK+ + K ++NE P C D ++
Sbjct: 132 DNSNMDESENQKNFKIEEPKPSGDFRNEGPKQCDDSKIEK 171
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 457 NIKVESPKFRPNNLYMNIPVSCRNNQKCS 543
N + + P++ Y NIPVS NN++ S
Sbjct: 100 NSATSNIRLTPSDTYNNIPVSDTNNEEIS 128
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 170 EDLRIIETCDTVDSPICEDPEQDVIVSPRIPSAKR 274
E R+ E CD S +C +QDV ++P R
Sbjct: 491 EKKRVREFCDLFGSLVCRHSKQDVEEELKLPPQHR 525
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 74 MKISEFSNMYYYLKNMSDNEKQDKTEELESKEED 175
++I+E + L+ NE Q TEE++S E+D
Sbjct: 126 VRINEIMEKQFVLQKKK-NELQSSTEEIDSTEKD 158
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 179 RIIETCDTVDSPICEDPEQDVIVS 250
RI+E C T + E+P++++I++
Sbjct: 525 RILERCSTSNGSTLEEPDRELIIA 548
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 457 NIKVESPKFRPNNLYMNIPVSCRNNQKCSCTHPRKN 564
N K PK + L NI S + N S T PRKN
Sbjct: 6 NQKSPKPKVASSKL-KNIKKSSKRNNSQSSTEPRKN 40
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 59 MLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQD 238
+LSD I+ SN Y Y + + N++ + + + I E D+ + E+P++D
Sbjct: 16 ILSDDATIN--SN-YAYGEQLQSNDQYNNIQHPAPSFANPFIHEQDDSYSDILEEEPDED 72
Query: 239 VIVSPRIPSA 268
SP PS+
Sbjct: 73 AYDSPERPSS 82
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,214
Number of Sequences: 5004
Number of extensions: 62666
Number of successful extensions: 259
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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