Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0285
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230...    30   2.5  
03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773...    30   2.5  
01_01_1187 + 9444742-9445317                                           29   3.3  
04_04_1478 - 33882625-33883639,33883725-33883849,33883935-338841...    29   4.4  
01_05_0250 - 19907517-19908429,19910000-19910268                       29   5.8  
11_06_0434 - 23512921-23513529                                         28   7.7  

>06_03_0611 -
           22721977-22722276,22722765-22722853,22722978-22723083,
           22723178-22723306,22723803-22723887,22723994-22724103,
           22724424-22724624,22725033-22725394,22725612-22725695,
           22725791-22725916,22725999-22726161,22726378-22726536,
           22727147-22727274,22727371-22727493,22727755-22727899,
           22727992-22728068,22728318-22728696,22729325-22729411
          Length = 950

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +1

Query: 451 PSNIKVESPKFRP---NNLYMNIP-VSCRNNQKCSCTHPRKNPNRS 576
           P+ +++  P++R    ++LY   P VSCR +Q C+ T P    N +
Sbjct: 107 PALLQLPRPEYRAMQESSLYAGFPDVSCRKSQSCAATIPFTGANET 152


>03_06_0344 -
           33276366-33276548,33277044-33277169,33277254-33277322,
           33277401-33277505,33277595-33277633,33277717-33278016,
           33278093-33278182,33278271-33278312,33278433-33278516,
           33278762-33278947,33279218-33279403,33279663-33280025
          Length = 590

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = +1

Query: 220 RRSRTRCHSVSPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQ 369
           +RS+ R   V+P P S++ ++ L   +  +DE E +  A  ++ +++E+Q
Sbjct: 12  KRSKKRKQPVAPPPESDSESEELSYDTAAADEEEGEEEAPNQMEELEEEQ 61


>01_01_1187 + 9444742-9445317
          Length = 191

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 394 HDDTADRIQQAIENDYLFQPSNIKVESPKFRPN 492
           ++ T+ R+  A   +Y ++P  ++ E+P F PN
Sbjct: 91  YEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPN 123


>04_04_1478 -
           33882625-33883639,33883725-33883849,33883935-33884144,
           33884645-33884650
          Length = 451

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 499 YMNIPVSCRNNQKCSCTHPRKNPNRSTLKRQ 591
           Y N P  CRN   C+  H    P R   ++Q
Sbjct: 405 YFNSPKGCRNGASCTFLHDASAPTRKDHQKQ 435


>01_05_0250 - 19907517-19908429,19910000-19910268
          Length = 393

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +1

Query: 394 HDDTADRIQ-QAIENDYLFQPSNIKVESP----KFRPNNLYMNIPVSCRNNQKCSCTHPR 558
           H D+A+ ++ ++I+N     PS++  ++P    K  PN+   N PV+  + Q    +  R
Sbjct: 301 HKDSAELLKTRSIQNKKAEMPSSVTGKAPTMPTKSAPNDSMKNKPVAIGSAQMSGSSRKR 360

Query: 559 KNPNRSTLKR 588
                +TLK+
Sbjct: 361 ARKGWTTLKQ 370


>11_06_0434 - 23512921-23513529
          Length = 202

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +2

Query: 68  DHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSPICEDPEQD 238
           D  K + F+ +++  + M+D+E+ D  ++ +  EED    E  D  D+   E+   D
Sbjct: 121 DQDKAATFTAVHWKEELMTDDEEDDDDDDEDESEEDDEFDEKEDDSDNEDDEESSDD 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,598
Number of Sequences: 37544
Number of extensions: 369390
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)