Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0285
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54140| Best HMM Match : TFA (HMM E-Value=4.6)                       34   0.12 
SB_19940| Best HMM Match : Drf_FH1 (HMM E-Value=0.97)                  31   1.5  
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            29   4.5  
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      29   6.0  
SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   6.0  
SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5)                      28   7.9  
SB_26241| Best HMM Match : B1 (HMM E-Value=2.5)                        28   7.9  
SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   7.9  

>SB_54140| Best HMM Match : TFA (HMM E-Value=4.6)
          Length = 337

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = +1

Query: 217 LRRSRTRCHSVSPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCH 396
           ++ S+T+  + S DP  E  T   ++ SDN+DES+K       +P  + Q   ++EL C 
Sbjct: 94  MQSSKTQLSTSSSDPRLENTTSTRQQQSDNADESKKTCAEQRVVPMTEVQ---EHELLCR 150

Query: 397 DD 402
            D
Sbjct: 151 LD 152


>SB_19940| Best HMM Match : Drf_FH1 (HMM E-Value=0.97)
          Length = 494

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 22/70 (31%), Positives = 37/70 (52%)
 Frame = +3

Query: 249 LPGSLQRNVHAKFGRNF**L**IRKAISCVVQTSKSQRTTTVPKRIAVSRRHSGQDPTSY 428
           +PG L  NV +KFG+       ++  +S  V +S +  TT VP  IA++ + +   P + 
Sbjct: 388 VPGVLSTNVTSKFGQPV-----VQPGVSLKVASSLTPATTAVPPLIALATQPT--KPAAT 440

Query: 429 *KRLPLPAIK 458
             +LP  A+K
Sbjct: 441 APQLPSTALK 450


>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1829

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +2

Query: 92  SNMYYYLKNMSDNEKQ---DKTEELESKEEDL 178
           ++ Y +  N+ D EK+   DK EE++SK+EDL
Sbjct: 184 THKYDFTSNIIDREKELIKDKIEEVKSKQEDL 215


>SB_33020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 528 QPEVFLYSPTEESKSFNIETPTSDISQINLSTKDIRS 638
           +PE++ Y   + S+S  I TP + +S     T D+R+
Sbjct: 421 RPEIWAYGVMQSSRSTRITTPWASLSSAVTYTADVRA 457


>SB_32051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1090

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 496 LYMNIPVSCRNNQKCSCTHPRKNPNRSTLKRQLV 597
           + + +PV  +NN K  CT    NP  STL R ++
Sbjct: 737 IQLGLPVEIKNNLKEHCTEFECNPCTSTLVRLII 770


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 702 GNY*TXSKTTFLPYSGVXKTVDGIGKTGTE 791
           G Y    KT+F   S   KTVDG GK GTE
Sbjct: 162 GEYSCSKKTSF--NSSKFKTVDGCGKAGTE 189


>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 221 EDPEQDVIVSPRIPSAKRARKIWKKFLITLMNPKS 325
           ++P+ DV+++PR+ S    R+ W++    L N  S
Sbjct: 618 DEPDDDVMMTPRLSSTPEDRQEWRERRRALSNDNS 652


>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +1

Query: 310 DESEKQSRASFKLPKVKE------QQLYQNELPCHDDTADRIQQAIENDYLFQPSNIKVE 471
           DE  K    +F+  KV E      Q L   E+P ++  A RI+     +Y F+P  I  +
Sbjct: 3   DELRKSGTKTFRDVKVDESNILYWQGLIVPEMPPYNKGAFRIEICFPAEYPFKPPKITFK 62

Query: 472 SPKFRPN 492
           +  + PN
Sbjct: 63  TKIYHPN 69


>SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +1

Query: 205 GLAYLRRSRTRCHSVSPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNE 384
           G+  +RR R       P P S      LE+++ N    E+ S +S+  PK++  +LY+N 
Sbjct: 556 GVVCIRRQRASSRYKPPTPVS------LEQLTKNP-MFERNSTSSYINPKLERWELYRNN 608

Query: 385 LPCHDDTAD 411
           +    D  D
Sbjct: 609 IEFVKDLDD 617


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 318 RKAISCVVQTSKSQRTTTVPKRIAVSRRHSGQD 416
           +K + C V T KS ++ T P+R AVSR  + ++
Sbjct: 193 KKRLVCHVPTEKSGKSITCPQRKAVSRSRAHRE 225


>SB_36361| Best HMM Match : ITAM (HMM E-Value=3.5)
          Length = 208

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +1

Query: 235 RCHSVSPDPFSETCTQN-----LEEISDNSDESEKQSRAS-FKLPKVKEQQLYQNELPCH 396
           R   +S  P++    Q+     L+  + N +  + Q++ S F  P+ K+   Y+N    H
Sbjct: 106 RYRGISAQPYATISKQDNTYEKLQGDTANGNYEQIQAKNSTFASPQAKDNAAYENINGDH 165

Query: 397 DDTADRIQQAIEN 435
            DTAD  Q   +N
Sbjct: 166 YDTADATQAQYDN 178


>SB_26241| Best HMM Match : B1 (HMM E-Value=2.5)
          Length = 155

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 354 SQRTTTVPKRIAVSRRHSGQD 416
           S RTTT  K IAVSRR++ +D
Sbjct: 54  SGRTTTSAKHIAVSRRYNSKD 74


>SB_30310| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 990

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 220 RRSRTRCHSVSPDPFSETCTQNLEEISDNSDESEKQS-----RASFKLPKVKEQQLYQNE 384
           RR  TR  S  P   SE      +E+S+  D  EK+S      + F    + E  L +N 
Sbjct: 108 RRGSTREKSQLPPLSSENWDSIRDEVSEGGDHEEKESSLLPPESDFPKASLSEDGLRKNV 167

Query: 385 LP-CHDDT 405
           +P  H D+
Sbjct: 168 MPEVHPDS 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,937,433
Number of Sequences: 59808
Number of extensions: 437427
Number of successful extensions: 1547
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)