Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0285
         (815 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55820.1 68418.m06956 expressed protein                             31   0.69 
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)...    31   0.69 
At1g43160.1 68414.m04973 AP2 domain-containing protein RAP2.6 (R...    31   1.2  
At5g14730.1 68418.m01728 expressed protein                             30   1.6  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    30   2.1  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    30   2.1  
At5g38020.1 68418.m04580 S-adenosyl-L-methionine:carboxyl methyl...    29   2.8  
At1g69020.1 68414.m07897 prolyl oligopeptidase family protein si...    29   2.8  
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)...    29   3.7  
At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger) fa...    29   4.9  
At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT...    29   4.9  
At4g19160.3 68417.m02827 expressed protein                             29   4.9  
At4g19160.2 68417.m02826 expressed protein                             29   4.9  
At4g19160.1 68417.m02828 expressed protein                             29   4.9  

>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +1

Query: 361 EQQLYQNELPCHDDTADRIQQAIENDYLFQPSNIKVESPKFRPNNLYMNIPVSCRNNQKC 540
           E+QL + E P H+ + + ++Q + N    Q  NI           L  ++ + CR NQ C
Sbjct: 157 EEQLLEEE-PQHNLSHNLVRQ-VSNHSHEQDVNIASPRDVHEKERLPESVSIDCRENQSC 214

Query: 541 SCTHPRKNPNRST 579
           S     KN    T
Sbjct: 215 SSPEHSKNQRVET 227


>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
           nearly identical to ubiquitin-conjugating enzyme UBC20
           [Arabidopsis thaliana] GI:22530867; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 180

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 397 DDTADRIQQAIENDYLFQPSNIKVESPKFRPN-NLYMNI 510
           + T  R+  +  NDY F+P  +K E+  F PN ++Y NI
Sbjct: 80  EGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNI 118


>At1g43160.1 68414.m04973 AP2 domain-containing protein RAP2.6
           (RAP2.6) identical to AP2 domain containing protein
           RAP2.6 GI:2281637 from [Arabidopsis thaliana]
          Length = 192

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 498 IYEYSRLMPQQ-PEVFLYSPTEESKSFNIETPTSDISQINLST 623
           +  YSR M QQ P V +  PTEE   F  E P ++  Q N S+
Sbjct: 149 LLSYSRCMEQQQPLVGMLQPTEEENHF-FEKPWTEYDQYNYSS 190


>At5g14730.1 68418.m01728 expressed protein
          Length = 246

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/99 (23%), Positives = 40/99 (40%)
 Frame = +2

Query: 35  FKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQDKTEELESKEEDLRIIETCDTVDSP 214
           F  Y   D++   +++   S  YY +K   +N+K+ + E L   +E L    T  T    
Sbjct: 17  FSFYASGDLVETAVRVIRESESYYSVKVDGENDKEFEFETLPLGDESLFHFSTMTTTFKR 76

Query: 215 ICEDPEQDVIVSPRIPSAKRARKIWKKFLITLMNPKSNL 331
             +D   D +   R+ S       W     +L +P  +L
Sbjct: 77  SSDD---DDVADDRVTSKNLFYGGWSVDPPSLTSPSESL 112


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 220 RRSRTRCHSVSPDPFSETCTQNLEEISDNSDESEKQSRASFK 345
           R+SR+R  SVSP P      ++     ++SD+S+++S +  K
Sbjct: 831 RKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRK 872


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 220 RRSRTRCHSVSPDPFSETCTQNLEEISDNSDESEKQSRASFK 345
           R+SR+R  SVSP P      ++     ++SD+S+++S +  K
Sbjct: 801 RKSRSRRRSVSPSPVRSRRKRSSPSSDESSDDSKRKSSSKRK 842


>At5g38020.1 68418.m04580 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 368

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 250 SPDPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAI 429
           S DP S+ C QN   ISD+  +   +         VKE  +    LP ++     +++ I
Sbjct: 215 SLDPLSKDCFQNWSSISDSLLDLVSEG-------IVKESDVDSFNLPFYNPDESEVREVI 267

Query: 430 ENDYLFQPSNIK 465
           E++  F+ SN +
Sbjct: 268 ESEGSFKISNFE 279


>At1g69020.1 68414.m07897 prolyl oligopeptidase family protein
           similar to SP|Q59536 Protease II (EC 3.4.21.83)
           (Oligopeptidase B) {Moraxella lacunata}; contains Pfam
           profiles PF00326: prolyl oligopeptidase family, PF02897:
           Prolyl oligopeptidase, N-terminal beta-propeller domain;
           contains non-consensus GA donor splice site at intron 5
          Length = 757

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
 Frame = +2

Query: 83  SEFSNMYYYLKNMSDNEKQ--DKTEELESKEEDLRIIETCDTVDSPICEDPEQDVIVSPR 256
           S+ S  +Y     ++N  Q  D+T E E  + D R+ +  D  D+ +CE  E        
Sbjct: 441 SDSSKPWYTADRSTENNGQLNDRTSEGEDGQLDSRMPKWEDLSDTYVCERQEVSSHDGVE 500

Query: 257 IP-SAKRARKIWKK 295
           +P +   +R+ WKK
Sbjct: 501 VPLTILYSREAWKK 514


>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
           nearly identical to ubiquitin-conjugating enzyme UBC19
           [Arabidopsis thaliana] GI:22530865; contains Pfam
           profile PF00179: Ubiquitin-conjugating enzyme
          Length = 181

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 397 DDTADRIQQAIENDYLFQPSNIKVESPKFRPN-NLYMNI 510
           + T  R+     NDY F+   +K E+  F PN +LY NI
Sbjct: 81  EGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNI 119


>At5g60820.1 68418.m07630 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 419

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +2

Query: 35  FKHYRLADMLSDHMKISEFSNMYYYLKNMSDNEKQD-KTEELESKEEDLRIIETCDTVD 208
           F HYR    L DH++   FS + Y L +   ++  D    E +    D+ + +   T D
Sbjct: 17  FNHYRHQRRLHDHLRDQSFSQILYPLPHWIQSDDGDLYISETDFSSGDVSVSDLVFTTD 75


>At4g37790.1 68417.m05348 homeobox-leucine zipper protein 22 (HAT22)
           / HD-ZIP protein 22 identical to homeobox-leucine zipper
           protein HAT22 (HD-ZIP protein 22) (SP:P46604)
           [Arabidopsis thaliana]
          Length = 278

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = +1

Query: 295 ISDNSDESEKQSRASFKLPKVKEQQ-LYQNELPCHDDTADRIQQAIENDYLFQPSNIKVE 471
           +SD+ D+ E  S A  KL   K+Q  L ++    H     + +QA+      +P  ++V 
Sbjct: 112 VSDDHDDEEGVS-ARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVW 170

Query: 472 SPKFRPNNLYMNIPVSCRNNQKCSCTHPRKN 564
               R         V C   +KC  T   +N
Sbjct: 171 FQNRRARTKLKQTEVDCEFLKKCCETLTDEN 201


>At4g19160.3 68417.m02827 expressed protein
          Length = 454

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/90 (28%), Positives = 42/90 (46%)
 Frame = +1

Query: 256 DPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIEN 435
           DP SET ++ L ++ D    SE  S     + K  E +L   ++ CH     ++ +A+ N
Sbjct: 153 DP-SETDSEELLQL-DGKSISEWVSEID-AISKEVEAELVSRDIGCH---LVQVLEAV-N 205

Query: 436 DYLFQPSNIKVESPKFRPNNLYMNIPVSCR 525
             LF     K  S    P N Y++  ++CR
Sbjct: 206 TVLFDLRGFKRTSITLDPENSYLHSVLNCR 235


>At4g19160.2 68417.m02826 expressed protein
          Length = 453

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/90 (28%), Positives = 42/90 (46%)
 Frame = +1

Query: 256 DPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIEN 435
           DP SET ++ L ++ D    SE  S     + K  E +L   ++ CH     ++ +A+ N
Sbjct: 153 DP-SETDSEELLQL-DGKSISEWVSEID-AISKEVEAELVSRDIGCH---LVQVLEAV-N 205

Query: 436 DYLFQPSNIKVESPKFRPNNLYMNIPVSCR 525
             LF     K  S    P N Y++  ++CR
Sbjct: 206 TVLFDLRGFKRTSITLDPENSYLHSVLNCR 235


>At4g19160.1 68417.m02828 expressed protein
          Length = 312

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 26/90 (28%), Positives = 42/90 (46%)
 Frame = +1

Query: 256 DPFSETCTQNLEEISDNSDESEKQSRASFKLPKVKEQQLYQNELPCHDDTADRIQQAIEN 435
           DP SET ++ L ++ D    SE  S     + K  E +L   ++ CH     ++ +A+ N
Sbjct: 12  DP-SETDSEELLQL-DGKSISEWVSEID-AISKEVEAELVSRDIGCH---LVQVLEAV-N 64

Query: 436 DYLFQPSNIKVESPKFRPNNLYMNIPVSCR 525
             LF     K  S    P N Y++  ++CR
Sbjct: 65  TVLFDLRGFKRTSITLDPENSYLHSVLNCR 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,333
Number of Sequences: 28952
Number of extensions: 316448
Number of successful extensions: 1128
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)