Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0284
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    29   0.029
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   3.3  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   3.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.4  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 0.029
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -1

Query: 189 WPDNRS*AHKRGQL--ATGRLADGHARGCIRRCYNRTAPTQLTEHAESYCGVVSTCDSHC 16
           W  NR   +K+  L  A G+ ++G+   C+R C +   P       +    V +  D HC
Sbjct: 164 WFQNRRVKYKKEDLPAAAGKASNGNKCCCLRTCSSAKRPKFENSSCDEDIDVTNIDDDHC 223


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 258 WLRNWKQCVDFYR 296
           W+RN  +C D+Y+
Sbjct: 224 WVRNVPECADWYK 236


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 645 LPLVAILLHLAFVKLFVAIEVC 580
           L L + LLHL     ++ IEVC
Sbjct: 273 LILFSCLLHLVVTPYYLLIEVC 294


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 188 GRITGAKLTSAVN*PRVGSQTVTLAAVYGAAITEQ 84
           G +TGA  T+ V+     S +V LA V+    TE+
Sbjct: 288 GTMTGAGGTAIVSISTSVSTSVYLAIVFNGLFTEE 322


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,662
Number of Sequences: 336
Number of extensions: 2602
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)