Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0284
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    28   1.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    26   6.3  
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    26   6.3  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   8.3  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.3  

>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +1

Query: 301 HISSPKQTMSIGSVQSMLCKEKPTQVVPPVVNSEVSKVIINQVRSTPALVRSVSAILTPT 480
           H+S+   T  + ++ S +    PT V PP V+   S+  I++    P + ++  A+  P 
Sbjct: 727 HLSTAFSTAPVSTIVSNI-SPLPT-VAPPNVSGSPSETPISKPEKVPVVSQTEKALPKPL 784

Query: 481 QVATER 498
            V TE+
Sbjct: 785 GVDTEK 790


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 256 VGYETGSSVSTFTDSHISSP 315
           +GYE  +SVS  +DS +SSP
Sbjct: 518 MGYERSNSVSYCSDSSLSSP 537


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 307 SSPKQTMSIGSV--QSMLCKEKPTQVVPPV 390
           S+P  T++ GS   QSM  + +PT  VPP+
Sbjct: 49  STPLSTLTNGSTIQQSMTNQPEPTSQVPPI 78


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 258 WLRNWKQCVDFYRQSH*FTETN 323
           W R++ Q +DF +  H FT ++
Sbjct: 406 WYRHFNQLIDFLKHPHGFTSSS 427


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = +1

Query: 241 WQRGSVGYETGSSVSTFTD-------SHISSPKQTMSIGSVQS 348
           WQ G V   T SSVST  +       ++   P Q  ++G+VQS
Sbjct: 32  WQSGQVNTVTWSSVSTDPEEMVIMLVNNAHYPNQNFNLGTVQS 74


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
 Frame = +1

Query: 253 SVGYETGSSVSTFTDSHISSPKQ-TMSIGSVQSMLCKEKPTQVVPPVVNSEV---SKVII 420
           S+   + S+ STF+ +  SSP   + SI S  ++L    P+     + +S +   S  I+
Sbjct: 591 SLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSIL 650

Query: 421 NQVRSTPALVRSVSAILTPTQVATERLIS 507
           +   ST  +  S+S   +    ++  L+S
Sbjct: 651 SSSISTIPISSSLSTYSSSVIPSSSTLVS 679


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,976
Number of Sequences: 5004
Number of extensions: 46198
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)