Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0284
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150           31   0.93 
10_08_0926 - 21609148-21609618,21609898-21610106,21611638-21611914     29   3.8  
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750...    29   3.8  
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775     29   5.0  
08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951     29   5.0  
07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239           28   8.7  
01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233           28   8.7  

>08_01_0300 + 2427524-2427827,2429066-2429274,2429512-2430150
          Length = 383

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 165 HKRGQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY 49
           HK+  L   +L  G  RG  R       PTQ+  HA+ Y
Sbjct: 110 HKKFLLGLSKLGKGDWRGISRNYVGSRTPTQVASHAQKY 148


>10_08_0926 - 21609148-21609618,21609898-21610106,21611638-21611914
          Length = 318

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 165 HKRGQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY 49
           H+R  L   +L  G  RG  R       PTQ+  HA+ Y
Sbjct: 101 HRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 139


>02_02_0179 +
           7500647-7500779,7503021-7503222,7503356-7503427,
           7503655-7503726,7504212-7504283,7504711-7504782,
           7505045-7505116,7505209-7505280,7505688-7505759,
           7506215-7506292,7506670-7506729,7506810-7506848,
           7506949-7506998,7507110-7507480,7508467-7508662,
           7508856-7508936,7509694-7509848,7510302-7510512,
           7510648-7510882,7510995-7511145,7511813-7512181
          Length = 944

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 307 SSPKQTMSIGSVQSMLCKEKPTQVVP 384
           +SP Q   + SV SMLC + P +VVP
Sbjct: 862 TSPVQRPRMSSVVSMLCGQAPLEVVP 887


>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
          Length = 1123

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 265 ETGSSVSTFTDSHISSPKQTMSIGSVQ--SMLCKEKPTQVVPPVVNSE 402
           ETG++ S   DS I+  K+T SI +V+  S + K +  +    VV SE
Sbjct: 410 ETGNAESVAIDSSITEVKETDSIAAVEKDSEISKTESVETASSVVISE 457


>08_02_0696 + 20137167-20137485,20137601-20137740,20137841-20137951
          Length = 189

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 253 SVGYETGSSVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVV 381
           +VG E+G + +  T   +  PK+T+ +G V  ++  ++ T+ +
Sbjct: 70  AVGDESGGAAAKITKIKLLKPKETLLLGKVYRLVTSQEVTKAL 112


>07_01_1043 - 9068201-9068223,9068437-9069355,9070472-9071239
          Length = 569

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 299 VTLVHRNKQCLLDQYSQCFAKK 364
           +TL  + +QCL +++ QCFA K
Sbjct: 516 LTLPLKQQQCLFEEWFQCFASK 537


>01_01_0651 - 4970685-4971053,4971185-4971381,4971867-4972233
          Length = 310

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 165 HKRGQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY 49
           H++  +   +L  G  RG  R       PTQ+  HA+ Y
Sbjct: 131 HRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,796
Number of Sequences: 37544
Number of extensions: 305103
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)