Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0284
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   30   2.2  
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_7660| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   5.1  
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)                      28   6.7  
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 271 GSSVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVVPPVVNSEVSK 411
           GS VS    SH+  P+ T  I S  S   +++   +VPPV  + + +
Sbjct: 13  GSLVSCANGSHVFDPRPTHWIKSSTSSQSRKRRVMLVPPVTKAPLDQ 59


>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 277 SVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVVPPVVNSEVSKVIINQVRSTPALVRS 456
           + +T T S  ++  +TMS+ +          TQ +P + N+  S  IIN    T A+  S
Sbjct: 698 ATNTMTTSP-NAKTETMSVAAATVTSSPNVTTQTMPVITNTVTSTSIINSGTPTSAMASS 756

Query: 457 VSA 465
            S+
Sbjct: 757 ASS 759


>SB_7660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 256 VGYETGSSVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVVPPVVNSEVSKVIINQVRS 435
           V  +  + V+T  +SH++S   +  I  V + +  +  TQ V   VNS+V   + +QV S
Sbjct: 49  VNAQVNAQVNTQVNSHVNSHVNSQVIAQVNAQVNTQVNTQ-VNSQVNSQVKAQVNSQVNS 107


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 675 CNLDPEFSIFLPLVAILLHLAFVKLFVAIEVC 580
           C L PEF  F  +  + L +A++ L +AI+ C
Sbjct: 812 CGLSPEFVSFGRVFTVFLVIAYILLPLAIQTC 843


>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
          Length = 1936

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 510  AGNTPPTAAPRSPRNRSYGAQQVDRLQSLRIILQKQDEEVLQLR 641
            A + PPT AP+   +++ G Q   +L S R ++   +   L++R
Sbjct: 1600 ATSPPPTVAPQVDEDKTDGPQTAPQLASHRWVIAANESVTLRVR 1643


>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = -1

Query: 624  LHLA--FVKLFVAIEVCQLAVHHSYGF*DFSEQQ*GECCLHTNESFCGNLSRSQYSRYTT 451
            LHL   F  + +   +CQL  H  Y + D    Q G   +     F G   R + S + +
Sbjct: 1018 LHLCKVFALVVMVFAICQLPNHVIYLWHDLGRVQKGPVFI----VFGGKFKRVRTSTFKS 1073

Query: 450  NKSRC*ANLIYDYFRYFRI 394
            N  +     +Y Y +YF +
Sbjct: 1074 NAIKVFPTRLYGYEKYFEM 1092


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,980,613
Number of Sequences: 59808
Number of extensions: 375248
Number of successful extensions: 1122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)