Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0284
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical p...    29   3.4  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    29   3.4  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    28   5.9  

>U39999-12|AAA81110.1|  577|Caenorhabditis elegans Hypothetical
           protein F41G3.3 protein.
          Length = 577

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 522 PPTAAPRSPRNRSYGAQQVDRLQSLRIILQKQDEE 626
           PP+AA  +P+ R Y  QQ D+ +    + +K+DE+
Sbjct: 332 PPSAAVNNPK-RGYQQQQADKARQWETLHRKKDEK 365


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -1

Query: 156 GQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY--CGVVSTCDSHCT 13
           G +  G   DG   GC+R       P  L E  ++    G+  TCD+ CT
Sbjct: 824 GSVVLGGEGDGLI-GCVRNVLINDEPVNLQEIVKTSEKTGITETCDTRCT 872


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 271 GSSVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVVPPV 390
           GSS ST   +H + P       SV S L +E+PT ++PPV
Sbjct: 658 GSSSSTMNITHTTFP-------SVPSPLVREEPTIILPPV 690


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,634,107
Number of Sequences: 27780
Number of extensions: 277554
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)