Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0284
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   9.0  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   9.0  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +1

Query: 253  SVGYETGSSVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVVPPVVNSEV 405
            S G ++GSS  ++T   +S  KQ   +     ++   +    +PP +  +V
Sbjct: 1068 SSGSDSGSSNGSWTAGTVSQQKQKRRMVKYGKLVMIHEENAPLPPALPPQV 1118


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -1

Query: 141 GRLADGHARGCIRRCYNRTAPTQLTEHAE 55
           G L D HA    RRC       QL  H E
Sbjct: 312 GALNDCHAEVVARRCLCEYLYKQLELHTE 340


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  LRALLIVLALFGYSSAVYSRE 119
           ++ALLIV ALF Y+    + E
Sbjct: 5   IKALLIVCALFIYTVTAETEE 25


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  LRALLIVLALFGYSSAVYSRE 119
           ++ALLIV ALF Y+    + E
Sbjct: 5   IKALLIVCALFIYTVTAETEE 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,879
Number of Sequences: 438
Number of extensions: 3039
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)