Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0284
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19000.2 68414.m02364 myb family transcription factor similar...    29   2.4  
At1g19000.1 68414.m02363 myb family transcription factor similar...    29   2.4  
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi...    29   4.1  
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy...    29   4.1  
At5g36870.1 68418.m04417 glycosyl transferase family 48 protein ...    28   5.5  
At3g15660.1 68416.m01985 glutaredoxin family protein contains Pf...    28   5.5  
At3g05550.1 68416.m00611 hypoxia-responsive family protein conta...    28   5.5  
At5g47390.1 68418.m05840 myb family transcription factor contain...    28   7.2  
At5g61620.1 68418.m07732 myb family transcription factor contain...    27   9.6  
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein...    27   9.6  
At2g07718.1 68415.m00968 cytochrome b, putative similar to Cytoc...    27   9.6  

>At1g19000.2 68414.m02364 myb family transcription factor similar to
           MybSt1 GI:7705206 from [Solanum tuberosum]
          Length = 285

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 189 WPDNRS*AHKRGQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY 49
           W +N    HKR  +   ++  G  +G  R       PTQ+  HA+ Y
Sbjct: 104 WTENE---HKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 147


>At1g19000.1 68414.m02363 myb family transcription factor similar to
           MybSt1 GI:7705206 from [Solanum tuberosum]
          Length = 285

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 189 WPDNRS*AHKRGQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY 49
           W +N    HKR  +   ++  G  +G  R       PTQ+  HA+ Y
Sbjct: 104 WTENE---HKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 147


>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 952

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +1

Query: 271 GSSVSTFTDSHISSPKQTMSIGSVQSMLCKEKPTQVVPPVVNSEVSKVIINQVRSTPALV 450
           GSS S+ + S I SPK  + I  ++ +  +      V P+V SEVS  + +   S  + +
Sbjct: 60  GSSSSSSSPSPIPSPKTPLKINPLKGLTNRSS----VSPLVQSEVSSKVSSFGSSLASKL 115

Query: 451 RSVSAILTP 477
           R  S +  P
Sbjct: 116 RLSSKLSPP 124


>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
           symporter (SUC2) nearly identical to sucrose-proton
           symporter SUC2 [Arabidopsis thaliana] GI:407092
          Length = 512

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 150 LATGRLADGHARGCIRRCYNRTAPTQLTEHAESYCGVVSTC 28
           +A G +  G+A G  R  Y +  P  +TE  + YC  + TC
Sbjct: 187 MAVGNVL-GYAAGSYRNLY-KVVPFTMTESCDLYCANLKTC 225


>At5g36870.1 68418.m04417 glycosyl transferase family 48 protein
            contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1862

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 669  LDPEFSIFLPLVAILLHLAFVKLFVAIEVCQL 574
            L  EF +   ++ + L LAF+ +F+ +  C+L
Sbjct: 1727 LGTEFQLLFRIIKVSLFLAFMAIFITLMTCRL 1758


>At3g15660.1 68416.m01985 glutaredoxin family protein contains Pfam
           profile PF00462: Glutaredoxin
          Length = 169

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 364 KPTQVVPPVVNSEVSKVIINQVRSTPALV 450
           KPTQ VPP     +  ++ N V+  P ++
Sbjct: 52  KPTQKVPPDSTDSLKDIVENDVKDNPVMI 80


>At3g05550.1 68416.m00611 hypoxia-responsive family protein contains
           Pfam profile: PF04588 hypoxia induced protein conserved
           region
          Length = 97

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 143 RVGSQTVTLAAVYGAAITEQRQHN*QSTQNH 51
           R+ +Q +TLAA+ GAA+ E   H  ++T  +
Sbjct: 54  RLHAQALTLAALAGAAVVEYYDHKTEATNRY 84


>At5g47390.1 68418.m05840 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 365

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 165 HKRGQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY 49
           H+   L   +L  G  RG  R       PTQ+  HA+ Y
Sbjct: 103 HRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKY 141


>At5g61620.1 68418.m07732 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 317

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 165 HKRGQLATGRLADGHARGCIRRCYNRTAPTQLTEHAESY 49
           H+   +   +L  G  RG  +   +   PTQ+  HA+ Y
Sbjct: 115 HRNFLIGLNKLGKGDWRGIAKSFVSTRTPTQVASHAQKY 153


>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 735

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +1

Query: 76  CWRCSVIAAPYTAASVTVCEPTRG*LTALVSLAPVIRPPV 195
           C   S  AAP   ASV V  PTR   T + S +PV +  V
Sbjct: 135 CVAKSYFAAPKEPASVPVSSPTREAETEINSASPVTQSTV 174


>At2g07718.1 68415.m00968 cytochrome b, putative similar to
           Cytochrome b (Swiss-Prot:P42792) [Arabidopsis thaliana];
           similar to Cytochrome b (Swiss-Prot:P09843) [Oenothera
           bertiana]; contains 3 transmembrane domains
          Length = 313

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 405 YFRINNRWHYLCRLFFAKH 349
           +F IN  +HY CRL   KH
Sbjct: 78  FFSINQLFHYFCRLPIIKH 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,460,860
Number of Sequences: 28952
Number of extensions: 245532
Number of successful extensions: 624
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)