Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0283
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    28   1.6  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   8.4  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -2

Query: 277 PRGHIVT*KFFPRSFLPKSV--RRPGCGLRFAIFVILLESVRVLIE 146
           PR  I T K+ P  F+PK++  +       F +F+++L+S+ +  E
Sbjct: 86  PRNKIRTAKYTPIDFIPKNIFLQFQNVANLFFLFLVILQSISIFGE 131


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 147 SIKTRTDSSKITKMANRRPQPGRRTDFGRNDRGKNFHVTMCPRGSPEARG 296
           S+ TR     +   +  + Q   ++D+     G+ F     PRGSP  RG
Sbjct: 402 SLTTRRSRRSLYSPSLMQMQQSLKSDY--EGLGRTFDPRFAPRGSPPVRG 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,127
Number of Sequences: 5004
Number of extensions: 59659
Number of successful extensions: 127
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)