Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0283
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    29   2.9  
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726...    29   2.9  
12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810           29   3.8  
11_03_0034 - 9124414-9124599,9124677-9124769,9125022-9125098,912...    29   5.0  
09_04_0202 - 15544498-15545037,15546043-15546449,15546874-155469...    29   5.0  
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    29   5.0  
04_04_0921 - 29431812-29432786                                         29   5.0  

>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 296  PPGLRTATGTHCYVKVFPTVVSTEVRTASRLWSAVRHLCNFTGIRS 159
            P   R  +G   ++   P   STE++   RL SA+ +LCN   +R+
Sbjct: 979  PSSARRRSGW-LFIAAAPVYASTELKAGFRLSSALFYLCNILWLRA 1023


>01_05_0344 +
           21172101-21172233,21172332-21172402,21172492-21172653,
           21172995-21173100,21174242-21174439,21174565-21174631,
           21174868-21175051,21175145-21175324,21175408-21175587,
           21176472-21176627,21177487-21178067,21178535-21178640,
           21179152-21179331,21179620-21179892
          Length = 858

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 198 RPQPGRRTDFGRNDRGKNFHVTMCPRGSPEARGSG 302
           RP PG     G +   +   VT CP G+P   G G
Sbjct: 529 RPTPGGEERTGGDGHRERVWVTSCPSGAPHRGGGG 563


>12_01_0631 - 5234452-5234468,5234536-5234839,5234926-5235810
          Length = 401

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 520 NRAGERINMNRKPFRPNEGQRQHNKNSPKXETDSKAKPV 636
           N++G++ + N+ P R    ++  N+ +PK  T S+ KP+
Sbjct: 358 NKSGDKGSPNKLPKRTMPRKKLANRPTPKIRTSSRYKPL 396


>11_03_0034 -
           9124414-9124599,9124677-9124769,9125022-9125098,
           9125725-9126401,9126423-9126653,9127760-9127826,
           9127843-9127993
          Length = 493

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 550 RKPFRPNEGQRQHNKNSPKXETDSKA-KP 633
           RKPF P  G  +  +NSPK + + KA KP
Sbjct: 182 RKPFWPKPGVPKPPRNSPKKQVNDKADKP 210


>09_04_0202 -
           15544498-15545037,15546043-15546449,15546874-15546977,
           15547580-15547788,15548092-15549428,15551680-15551941
          Length = 952

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 529 GERINMNRKPFRPNEGQRQHNKNSPKXET 615
           GE +  N KP   NEG R+   N P   T
Sbjct: 872 GEGLEENHKPQEVNEGDREEENNQPGAST 900


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
 Frame = -1

Query: 350 PAWPRRSLQPEGKG--WVTAPPGLRTATGTHCYVK 252
           P WP R L P G    WV  PP    A   H Y++
Sbjct: 305 PVWPPRHLVPRGPAPPWVPPPPPSDPAFWHHPYMR 339


>04_04_0921 - 29431812-29432786
          Length = 324

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 368 GGYWQEPAWPRRSLQPEGKGWV 303
           GG W   +WPRR L   G+G V
Sbjct: 171 GGRWLSSSWPRRRLFSAGRGTV 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,421,485
Number of Sequences: 37544
Number of extensions: 472099
Number of successful extensions: 1195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)