Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0283
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 31 0.72
SB_38788| Best HMM Match : rve (HMM E-Value=4e-06) 31 0.72
SB_56408| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4) 30 1.7
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 30 2.2
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 29 2.9
SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011) 29 5.1
SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5) 29 5.1
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2) 28 6.7
SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_20308| Best HMM Match : TP2 (HMM E-Value=3.6) 28 8.9
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 188 GEPQTTTGTPYGLR*KRPWEKLSRNNVSPWQSGGPGERLPNLFP 319
G+P PY R +P RN+V P+ P LP++ P
Sbjct: 197 GQPSQLEPIPYSARYHKPASPKGRNSVEPFGGNRPPRNLPHITP 240
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 31.5 bits (68), Expect = 0.72
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = +3
Query: 216 RTDFGRNDRGKNFHVTMCPRGSPEARGSGY-PTFSLWL-----EAPPRPRWLLPVT 365
+ DF D K V C R E RGSGY SL++ +AP R LPVT
Sbjct: 200 KVDFSGKDISKKLRVLDCSRWLTELRGSGYGGMLSLFMADRVEQAPLRDHTSLPVT 255
>SB_38788| Best HMM Match : rve (HMM E-Value=4e-06)
Length = 956
Score = 31.5 bits (68), Expect = 0.72
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Frame = +3
Query: 201 PQPGRRTDFGRNDRGKNFHVTMCP--RGSPEARGSGYPTFSLWLEAP------PRPRW 350
P+P D GRN+R K P +GS + RGSG F + P PR RW
Sbjct: 126 PEPIHHADRGRNNRAKKRGAPRGPGNKGSDQQRGSGPSAFGKSTQPPENQQQTPRCRW 183
>SB_56408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2
Query: 364 VTGKSQRGLGGASSQREKVG*PLPRASG 281
V G S RG+GG SSQ G LPR SG
Sbjct: 35 VGGISNRGIGGFSSQPSPSGRRLPRRSG 62
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +3
Query: 153 KTRTDSSKITKMANRRPQPGRRTDFGRNDRGKNFHVTMCPRGSPEARGSGYPT 311
K T SS+ A+R P P DFG + G + R P ARG PT
Sbjct: 89 KQATPSSEKEPRASRTPSPSDSIDFGAVETGDGLQHLVKERARP-ARGRRLPT 140
>SB_2250| Best HMM Match : MgtE_N (HMM E-Value=8.4)
Length = 232
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2
Query: 364 VTGKSQRGLGGASSQREKVG*PLPRASG 281
V G S RG+GG SSQ G LPR SG
Sbjct: 35 VGGISNRGIGGFSSQPSPSGRRLPRRSG 62
>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
Length = 2996
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 141 SFSIKTRTDSSKITKMANRRPQPGRRTDFGRNDRGKNFHVTMCPRGSPEAR 293
SF+ T+TD+ + R PQP DF FH + P GSP R
Sbjct: 2624 SFNQNTKTDNKDCEEDEKREPQPTMLQDFAGYTTLHGFHFLIHP-GSPLRR 2673
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +3
Query: 132 LFASFSIKTRTDSSKITKMANRRPQPGRRTDFGRNDRGKNFHVTMCPRGSPEAR 293
+ SF+ T+TD + R PQP DF FH + P GSP R
Sbjct: 2811 IMESFNQNTKTDIKDCKEDEKREPQPTMLQDFAGYTTLHGFHFLIHP-GSPFRR 2863
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 255 HVTMCPRGSPEARGSGYPTFSLWLE 329
H T+C + SP + SGY TFS+W++
Sbjct: 1332 HHTLCYKNSPPSCPSGY-TFSIWMK 1355
>SB_37260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 818
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 346 RGLGGASSQREKVG*PLPRASGLPRGHI 263
RGLG A+S +E +G P PR G +GH+
Sbjct: 444 RGLGMAASIQELIGCPTPRCDG--KGHV 469
>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 807
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 187 WRTADHNRDAVRTSVETTVGKTFT*QCVPVAVRRPGGA 300
W+TA+ NR+A V +V K F + +VR P A
Sbjct: 238 WKTAEDNREAFEAEVVDSVAKNFYVDDLLKSVRTPEAA 275
>SB_40696| Best HMM Match : DUF1096 (HMM E-Value=5.5)
Length = 582
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 451 THIRPKVPSNGHV*ERWDRVLLRLEQIK-EVTGKSQRGLGGASSQREKVG*PLPRASGLP 275
+++RP+ + RW R +RLE I+ + TG S R +++ R PL R G P
Sbjct: 380 SYVRPQRHISSQTLARWLRTSMRLEGIECQFTGHSTRSASTSAAARAVF--PLERKLGTP 437
>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
Length = 468
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 333 EPPARGKRLGNRSPGPPDCHGDTLL--RESFSHGRFYRSPYGVPVVV 199
EPPA+ + R P P C T+ + +G YRS PV+V
Sbjct: 164 EPPAKSAQTPPRIPTPTSCQPSTISPGGTPYMYGGPYRSALTYPVLV 210
>SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = -1
Query: 356 QEPAWPR---RSLQPEGKGWVTAPPGLRT 279
+ P WP L+P GK W + PG R+
Sbjct: 238 RSPPWPEGPVTGLRPSGKSWASFSPGYRS 266
>SB_20308| Best HMM Match : TP2 (HMM E-Value=3.6)
Length = 318
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -3
Query: 318 GKRLGNRSPGPPDCHGDTLLRESFSHGRFYRSPYGVPVVVCGSPSL*FYWNPFG 157
G R RSP P DCH L R G+ Y + P C P W FG
Sbjct: 270 GHRETERSPSPRDCHHTALAR--CQEGKQYEPNHAAP---CDRPRA--AWYEFG 316
>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 198 RPQPGRRTDFGRNDRGKNFHVTMCPRG 278
R + GR DFGR DRG+ ++ RG
Sbjct: 177 RGERGRGIDFGRADRGRGINLGRSDRG 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,563,757
Number of Sequences: 59808
Number of extensions: 483822
Number of successful extensions: 1291
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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