Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0283
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z69302-7|CAL36505.1|  115|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z22176-5|CAA80134.1|  278|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF047651-9|AAC02720.2|  509|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U64856-1|AAB04985.2|  429|Caenorhabditis elegans Hypothetical
           protein T25F10.3 protein.
          Length = 429

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +3

Query: 102 LISDFISYKFLFASFSIKTRTDSSKITKMANRRP--QPGRRTDF-GRNDRGKNFHVTMCP 272
           L+   I + FL A+ + +  T S++      R P  +P    DF G     + + +T C 
Sbjct: 6   LVYSLIPFSFLLAADNTENATTSAEFLLPTRRTPPAKPQHGVDFLGPLWLSRTYKITCCR 65

Query: 273 RGSPEA 290
           RGSP A
Sbjct: 66  RGSPVA 71


>Z69302-7|CAL36505.1|  115|Caenorhabditis elegans Hypothetical
           protein F40F8.12 protein.
          Length = 115

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 96  ITLISDFISYKFLFASFSIKTRTDSSKITKMANRRPQPGRRTD 224
           I L+  FI+Y    +SFS  + T S   +K AN  P P    D
Sbjct: 5   ILLLPFFIAYSVCQSSFSHASSTPSVTTSKYANSSPTPSDAVD 47


>Z22176-5|CAA80134.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK1098.6 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 175 LLESVRVLIENDANKNLYEMKSLIRVID*IK*QLNTKYFEQYHDESRNYKSK 20
           L+E V     +D N+N  EMK +++  D +K +++ K  E  H   + YK K
Sbjct: 72  LMEMVDEKTFDDQNQNSEEMKLILKERDELKKKVDQKSKETVHWTKKYYKLK 123


>AF047651-9|AAC02720.2|  509|Caenorhabditis elegans Hypothetical
           protein C05D2.3 protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 469 IPTVKPTHIRPKVPSN-GHV*ERWDRVLLRLEQI 371
           IP VKP +I   VPSN     E W++V   LE++
Sbjct: 30  IPDVKPGYIEKSVPSNPPTTPESWEKVFGDLEKV 63


>Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical
          protein T04A11.8 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 8  SLADFAFVIPTFVVVLFEIFRV 73
          S + F ++IPTFV++ F IFR+
Sbjct: 31 SFSPFIYIIPTFVII-FRIFRI 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,009
Number of Sequences: 27780
Number of extensions: 370420
Number of successful extensions: 885
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)