Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0283
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.059
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.55 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.9  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 0.059
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 206 TGTPYGLR*KRPWEKLSRNNVSPWQSGGPGERL 304
           TGT YG R KR   +LSR+N +PW      E L
Sbjct: 550 TGTLYG-RCKREGIELSRSNPTPWSEDAMTEAL 581


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 437 GPNMGRFDRGYEPNXMG 487
           GP +GR+D G +P  +G
Sbjct: 203 GPRLGRYDNGIDPLPLG 219


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 208 GCGLRFAIFVILLESVRVLIENDANKNLYEMKSLIRVI 95
           GCG  + + +I  +   V+++  + K L    +LIR+I
Sbjct: 136 GCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 173


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 422 WACLGAMGPGSASVG 378
           W C    GPGS+S G
Sbjct: 14  WCCDNLGGPGSSSAG 28


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 208 GCGLRFAIFVILLESVRVLIENDANKNLYEMKSLIRVI 95
           GCG  + + +I  +   V+++  + K L    +LIR+I
Sbjct: 102 GCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 139


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 208 GCGLRFAIFVILLESVRVLIENDANKNLYEMKSLIRVI 95
           GCG  + + +I  +   V+++  + K L    +LIR+I
Sbjct: 12  GCGSIWTMTMIAFDRYNVIVKGLSGKPLSINGALIRII 49


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 529 QRDCNFPTPEITMIAHXIRLIP 464
           Q  C  P P I +I H + L+P
Sbjct: 486 QWTCRQPEPLIELIEHWMPLLP 507


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,299
Number of Sequences: 438
Number of extensions: 4868
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)