Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0283
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ...    31   0.59 
At1g53260.1 68414.m06035 hypothetical protein low similarity to ...    29   2.4  
At3g04900.1 68416.m00532 heavy-metal-associated domain-containin...    29   4.2  
At2g45850.2 68415.m05703 DNA-binding family protein contains a A...    29   4.2  
At2g45850.1 68415.m05702 DNA-binding family protein contains a A...    29   4.2  
At3g10670.1 68416.m01283 ABC transporter family protein similar ...    28   7.3  

>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 276 HGDTLLRESFSHGRFYRSPYGVPVVVCGSPSL*FY--WNPF 160
           +G  L R SF  G + +SPYG P+V+   P +  Y  WNP+
Sbjct: 190 YGLVLTRPSFLTGSYLQSPYGPPMVL--PPGMVPYSGWNPY 228


>At1g53260.1 68414.m06035 hypothetical protein low similarity to
           SP|Q38732 DAG protein, chloroplast precursor
           {Antirrhinum majus}
          Length = 358

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 192 NRRPQPGRRTDFGRNDRG 245
           NRRP+  R +D GRNDRG
Sbjct: 167 NRRPRRPRNSDGGRNDRG 184


>At3g04900.1 68416.m00532 heavy-metal-associated domain-containing
           protein contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 208

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
 Frame = +3

Query: 258 VTMCPRGSPEARGSGY--PTFSLWLEA----PPR--PRWLLPVTS 368
           V  CP G    RG GY  PT  + + A    PPR  P WL P T+
Sbjct: 114 VETCPAGGETFRGFGYPGPTTMMQMPAFSLPPPRGLPGWLAPPTN 158


>At2g45850.2 68415.m05703 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 348

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 306 GNRSPGPPDCHGDTLLRESFSHGRFYRSPYGVPVVVCGSPSL 181
           G    GPP  HG    ++   H     SP+G      GSPSL
Sbjct: 20  GLSGSGPPTFHGSPQQQQGLRHLPNQNSPFGSGSTGFGSPSL 61


>At2g45850.1 68415.m05702 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 348

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -3

Query: 306 GNRSPGPPDCHGDTLLRESFSHGRFYRSPYGVPVVVCGSPSL 181
           G    GPP  HG    ++   H     SP+G      GSPSL
Sbjct: 20  GLSGSGPPTFHGSPQQQQGLRHLPNQNSPFGSGSTGFGSPSL 61


>At3g10670.1 68416.m01283 ABC transporter family protein similar to
           ABC transporter ATPase GB:AAC68280 [Chlamydia
           trachomatis]
          Length = 338

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 511 PTPEITMIAHXIRLIPTVKPTHIRPKVPSNGHV*ERWDRVLLRL---EQIKEVTG 356
           P   + MI H  RL+  +KPT I   +  NG + +  D  L +L   E  K ++G
Sbjct: 286 PKNSVLMITHYQRLLDYIKPTLIH--IMENGRIIKTGDNSLAKLLEKEGYKAISG 338


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,902
Number of Sequences: 28952
Number of extensions: 346788
Number of successful extensions: 839
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)