Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0282
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    29   0.44 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   3.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   7.2  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    25   9.5  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 145  VLVYRTEKYQKLKVEVERQSKKLEKRKE 228
            +L    EK +KLKVEVER+ + L +++E
Sbjct: 1074 LLAQAQEKLEKLKVEVERRRRLLSEKEE 1101


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = +3

Query: 375 FNSIFDGRVV----AKLPFYPISWIQGLSHRNLP 464
           FN IF   +V     +LP+Y   WI    +R LP
Sbjct: 8   FNYIFGSEIVNDVKKRLPYYKSDWIDACHYRVLP 41


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -2

Query: 250 CLVSLHELPYVSLIFYSVVRLPLS---VFDISPFCRLRPMLSLLLRTQCR 110
           CLVS  +    SL  Y+ + +  +   +  +S FC +R  LS +L + CR
Sbjct: 325 CLVSWRD--NASLFNYAAIIISFNHQMIPHVSQFCHVRSYLSAILPSVCR 372


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = +1

Query: 454 GIYLVMITQIVLSYFCTFLYNEHQTKHTKVAWFCTFSSWLQNKVVLYLLHL 606
           G+  +    +V   FC+   N    K  K+ W+     W+    + YL+ L
Sbjct: 364 GVVTIFSFSLVALIFCSNTNNNSTNKLWKIRWY-FLDGWIDGVHLTYLITL 413


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 43  YLSLD*RFCKMWSD 84
           Y+ L  RFCK WSD
Sbjct: 298 YIGLCSRFCKQWSD 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,061
Number of Sequences: 5004
Number of extensions: 44833
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)