Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0282
(653 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06660.1 68418.m00752 expressed protein contains PF05809: Euk... 80 1e-15
At3g12030.1 68416.m01492 expressed protein similar to membrane p... 80 1e-15
At5g25310.1 68418.m03003 exostosin family protein contains Pfam ... 30 1.5
At1g53200.1 68414.m06030 expressed protein 29 2.0
At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai... 29 2.7
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 29 3.6
At3g50170.1 68416.m05485 hypothetical protein contains Pfam prof... 28 4.7
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 28 6.2
>At5g06660.1 68418.m00752 expressed protein contains PF05809:
Eukaryotic protein of unknown function (DUF841)
Length = 196
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = +3
Query: 306 DLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYPISWIQGLSHRNLPGDDYTDC 485
DLSL K KS + + + NS+F+G+VVAKLPF+PI+ ++ +SHR L GDD TDC
Sbjct: 93 DLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVRKMSHRGLKGDDSTDC 152
Query: 486 SFIFLYIL 509
S FLY+L
Sbjct: 153 SMAFLYLL 160
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +1
Query: 76 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRK 225
++DSL +V IS CTA + E ++W+L+YRT Y+ LK +++ SKKLE K
Sbjct: 13 YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLETMK 62
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 509 CTMSIRQNIQKLLGFAPSR 565
C++SIR N+QK LGF+P R
Sbjct: 161 CSISIRTNLQKFLGFSPPR 179
>At3g12030.1 68416.m01492 expressed protein similar to membrane
protein GB:BAA86974 GI:6467175 from [Homo sapiens]
Length = 196
Score = 79.8 bits (188), Expect = 1e-15
Identities = 35/68 (51%), Positives = 47/68 (69%)
Frame = +3
Query: 306 DLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYPISWIQGLSHRNLPGDDYTDC 485
DLSL K KS + + + NS+F+G+VVAKLPF+PI+ ++ +SHR L GDD TDC
Sbjct: 93 DLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVKKMSHRGLKGDDPTDC 152
Query: 486 SFIFLYIL 509
S FLY+L
Sbjct: 153 SMAFLYLL 160
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +1
Query: 76 WSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDS 243
++DSL +V IS CTA + E ++W+L+YRT Y+ LK +++ +KKLE K + S
Sbjct: 13 YADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPSS 68
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 509 CTMSIRQNIQKLLGFAPSR 565
C++SIR N+QK LGF+P R
Sbjct: 161 CSISIRTNLQKFLGFSPPR 179
>At5g25310.1 68418.m03003 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 334
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 NIRNNKFKFILS-VSFIRLTILQNVERFSLNSFHLYLHCVLRRRLNMGLS 152
+I N K++++ S + ++R N ++FHL LH + RRLN+ L+
Sbjct: 285 SISNEKYEWLKSNLRYVRRHFELNDPPQRFDAFHLTLHSIWLRRLNLKLT 334
>At1g53200.1 68414.m06030 expressed protein
Length = 613
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +1
Query: 157 RTEKYQKLKVEVERQSKKLEKRK 225
+T+K +K+KVE E ++ KLEK K
Sbjct: 7 KTDKLEKIKVETEEKTDKLEKIK 29
>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 225
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 172 QKLKVEVERQSKKLEKRKEAHGDSLD 249
QK+ E ERQ++K+E E GD++D
Sbjct: 124 QKIMQEFERQNEKMEMVSEVMGDAID 149
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 157 RTEKYQKLKVEVERQSKKLEKRKEAHGDSLD 249
+ E+ ++ KVE++ +KLEKR +A D
Sbjct: 407 KIEELERQKVEIDHSEEKLEKRNQAMNKKFD 437
>At3g50170.1 68416.m05485 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 541
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 132 RLNMGLSLQNGEISKTESGSRTTE*KIRET*GSSW 236
R N ++QN + S +ESG E + ET G SW
Sbjct: 56 RPNQDQNVQNHKQSHSESGKEVVEERPEETTGDSW 90
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 550 TKQLLYVLSDAHCTRMYKNMKEQS 479
TK LLY SD+ R++KN+KE S
Sbjct: 105 TKDLLYTGSDSKNIRVWKNLKEFS 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,229,903
Number of Sequences: 28952
Number of extensions: 222121
Number of successful extensions: 595
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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