Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0281
(806 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 64 1e-10
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 33 0.18
Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.3
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 29 3.0
AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical ... 29 3.0
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 5.2
U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical pr... 29 5.2
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 28 6.8
AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical ... 28 6.8
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/102 (34%), Positives = 49/102 (48%)
Frame = +3
Query: 261 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 440
+LK ET EKN LP K+ VA EK H + +EHFD T++ T +EK L
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 441 XXXNKFLNGIENFDPTKLKHTETARRTRSPQRTSLSKRNQLE 566
+ + I NF LK TET + P T +++ L+
Sbjct: 83 KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/85 (34%), Positives = 38/85 (44%)
Frame = +3
Query: 255 SSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXX 434
S++L T +EK LP D + EK H L D + +F +K T T EKN L
Sbjct: 59 STKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL----PSP 114
Query: 435 XXXXXNKFLNGIENFDPTKLKHTET 509
K L +FD + L H ET
Sbjct: 115 TDVAREKTLQMAASFDKSALHHVET 139
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 255
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FD
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFD 58
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 124 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 252
++E F+++ L EKIVLPSA+D+ EK L D I F
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNF 95
Score = 33.9 bits (74), Expect = 0.14
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 79 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 219
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 33.5 bits (73), Expect = 0.18
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Frame = +2
Query: 125 SSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEPA 298
SS AS A SVT T ++ + + + KT P R +SL + L PA+ + EEP
Sbjct: 251 SSIASYSAESVTETALESVNTKSVESKTRPSSRRKSLILGAASPLKSPAKIEKPRLEEPE 310
Query: 299 S----GQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAP 418
+R R EP +S L +D E ++E+ P
Sbjct: 311 QKSKRSRRSLRLNPDAIEPPVKSCDLLEDEREESSSKKRENHDP 354
>Z93383-3|CAB07625.1| 309|Caenorhabditis elegans Hypothetical
protein F54B8.3 protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Frame = -1
Query: 509 SFRVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQ 345
+F V+ L+ ++V A++ F ++ DR Q I +F+R LH+ VE++NS
Sbjct: 98 TFLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYV 155
Query: 344 EVLVGFLRC 318
+ ++ LRC
Sbjct: 156 DDVMTILRC 164
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 371 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AE---AHGNCEKNPLPTKDV 541
D+DE H K+S A D + +E +P++ +E++ E G E+ +D+
Sbjct: 127 DTDEEHSSADKKSKAEDEE-EVEDDEEPVPKKKKEVQEEPEEEESVEGEDEEESQEVEDL 185
Query: 542 IEQEK 556
E EK
Sbjct: 186 KEDEK 190
>AF106592-4|AAK21366.1| 786|Caenorhabditis elegans Hypothetical
protein D1037.1 protein.
Length = 786
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 383 AHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AE--AHGNCEKNPLPTKDVIEQEK 556
+ D R +P+RS RS E + + PER RS E + + + +++VI++EK
Sbjct: 270 SRDTHRTRRRSPERSRRSTETRNERPERPSRWRSRSRERKEYDSYRRRRSRSREVIDKEK 329
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 5.2
Identities = 30/131 (22%), Positives = 50/131 (38%)
Frame = +2
Query: 80 PP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRSLIE 259
P + SP + ++ + + +P+ S + P + +P RR RS ++ S
Sbjct: 302 PRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPA- 360
Query: 260 PAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 439
P A S PA +R + +SPP P R+ ++ K P R RS
Sbjct: 361 PKRAKSRSKSPPARRRRSPSASKSPPAP-----RRRRSPSKSRSPAPKREIPPARRRRSP 415
Query: 440 EGKEQIPERHR 472
+ P R
Sbjct: 416 SASKSPPAPKR 426
>U88178-4|AAC24411.1| 460|Caenorhabditis elegans Hypothetical
protein W09C3.2 protein.
Length = 460
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Frame = +2
Query: 167 PMKRLCFR-LLKTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQRCCRSGESPPEP 343
P C R L+KT PL RS+Y +S E + G A+ PP+
Sbjct: 295 PKNPSCERTLMKTQPLSEARSIYVGTGQSTYESKPEKSNGGSIYATALPAI----VPPDQ 350
Query: 344 LGRS*TLRQDSDEAHDDGRKESTAPDRS 427
+ ++ ++R+ + D K+S + RS
Sbjct: 351 VQKASSIRKPATVTPDKSIKKSASRKRS 378
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 28.3 bits (60), Expect = 6.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 266 EAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 406
E + E+ + R E PEPL R D DE DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539
>AC024819-3|AAF59587.2| 923|Caenorhabditis elegans Hypothetical
protein Y55B1AL.3a protein.
Length = 923
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +2
Query: 17 FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 196
F P+P + + + P TSP+SP + S++ P VSVTS P ++
Sbjct: 19 FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75
Query: 197 KTSPLRR 217
+P+++
Sbjct: 76 TVTPIQQ 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,387,770
Number of Sequences: 27780
Number of extensions: 401315
Number of successful extensions: 1381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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