Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0281
         (806 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    29   0.051
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.62 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.62 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.5  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 209 LRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQR 310
           LRR R L +TV+R+ +     H DSG   ++ QR
Sbjct: 248 LRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQR 281


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 380 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAHGNCEKNPLPTKDVIE 547
           E HDD  + S  P   + + E    I    R+ RS    AH      P+  + V+E
Sbjct: 59  EGHDDREQPSVYPLLRFENPETHHPIRHGRRQSRSMDLNAHREQMSWPVKKEAVVE 114


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 329  SPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKE 451
            SPP PL  S    +D D   D  + + ++ +R   +G  +E
Sbjct: 1396 SPPTPLSISRAGSRDEDSTRDSTKLDRSSREREVHNGGQQE 1436


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  SVSDTPSLKDLPKVATDLKS 123
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,027
Number of Sequences: 438
Number of extensions: 5304
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)