Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0281
         (806 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    33   0.29 
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    30   2.1  
At3g53640.1 68416.m05925 protein kinase family protein contains ...    29   3.6  
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa...    29   4.8  
At1g80080.1 68414.m09374 leucine-rich repeat family protein cont...    29   4.8  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   6.3  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    28   8.4  

>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 95  SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIEPAE 268
           SP   ++ R  S++  P+ S +S        R +  ++ PL R RSLYS+VSRS      
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252

Query: 269 AHRDSGEEPAS 301
             R     P S
Sbjct: 253 RSRSRSNSPVS 263


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 52  TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 222
           T   S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E   
Sbjct: 74  TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133

Query: 223 KS 228
            S
Sbjct: 134 SS 135


>At3g53640.1 68416.m05925 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 642

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
 Frame = +2

Query: 275 RDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS-----G 439
           R+S  +   G+       S     GR     +  D+  D GR+E  +    Y+S     G
Sbjct: 82  RESNRDNYRGRSSRDKARSSSRETGRENERERRKDQDRDRGRREDQSDQEIYKSGGDGYG 141

Query: 440 EGKEQIPERHRELRSH--*AEAHGNCEKNPLPTKD 538
           E +    +    L+SH    E  GN E++ +   D
Sbjct: 142 EVRHDAEDDLDSLKSHKPNGETQGNVERSEVDNDD 176


>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 508

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 462 NGIENFDPTKLKHTETARRTRSPQRTSLS 548
           NGI +F  TKL HT    RT +  RTS+S
Sbjct: 373 NGIVSF--TKLPHTTATTRTSTSSRTSIS 399


>At1g80080.1 68414.m09374 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 496

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +2

Query: 209 LRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQRCCRSGESPPEPLGRS*TLRQDSDEAH 388
           +RR   LY+     +   ++     G +  S  R C +  S P P G    L ++ D A 
Sbjct: 401 MRRKLRLYNNAGLCVNRDSDLDDAFGSKSGSTVRLCDAETSRPAPSGTVQHLSREEDGAL 460

Query: 389 DDGRKESTAPDRS 427
            DG  + ++  +S
Sbjct: 461 PDGATDVSSTSKS 473


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 216 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 97
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 64  SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 216
           S SD+PS  L+D+  ++ +LK  L+G  +     VDTN       AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,508,455
Number of Sequences: 28952
Number of extensions: 377045
Number of successful extensions: 1178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)