Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0280
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.0  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   1.8  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.7  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 519 PDNVFTIIKSTYVLIQAMNNRNFIQIRIH 433
           P NVFT  ++ ++ + A  N    +++I+
Sbjct: 164 PTNVFTFPETQFIAVTAYQNEKITKLKIN 192


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 424 VTTMNSDLNKISIVHSLD*HIGTFY 498
           +++ N+ L KIS V S+D ++GT +
Sbjct: 114 MSSTNAALPKISYVKSIDVYLGTCF 138


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/44 (20%), Positives = 17/44 (38%)
 Frame = -1

Query: 700 IFPTSFNLHHASA*FLEPNTKIILDKLQETKNKNIEIYYDKVIN 569
           + P  +N+HH +     PN +   D    T +  +       +N
Sbjct: 22  VIPPHYNIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTSSVN 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,863
Number of Sequences: 336
Number of extensions: 2900
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)