Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0280
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.1  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    28   1.5  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.0  
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.9  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   7.9  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -2

Query: 186  LRFFQGTFWRIPRSYVQRLCLIFPHLCTFTDIQQLINHRYYTFKPEETLNRQNKT 22
            L + Q  F RI +++  ++CL+        DI    + ++Y  + E+  N   KT
Sbjct: 1420 LNYSQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKT 1474


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 646  NTKIILDKLQETKNKNIEIYYDKVINNFRSM 554
            N K  L +LQ TKNK +E    + +NN +S+
Sbjct: 1099 NDKDQLYQLQATKNKELEAKVKECLNNIKSL 1129


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 133 PLDVTSRDPPKSPLKK 180
           PL V+ R PPK PL+K
Sbjct: 298 PLHVSPRKPPKPPLRK 313


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 631 LDKLQETKNKNIEIYYDKVINN 566
           +D+L+E  + N  IY+D++ NN
Sbjct: 249 IDRLKEESSSNKSIYHDELQNN 270


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 146 VTSSGFVSFSHICALSQIFNS**TTVITHLNLK-KH*IDKIKQ 21
           VT   F  FSHI A+    N      I  LN+K KH  D + +
Sbjct: 112 VTMKSFTRFSHIVAIRSTGNCFSWDTIERLNIKPKHWRDLVNE 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,500
Number of Sequences: 5004
Number of extensions: 44963
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)