Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0280
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65210.1 68414.m07393 hypothetical protein                          31   0.56 
At3g44120.1 68416.m04730 F-box family protein contains Pfam:PF00...    29   3.0  
At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00...    29   3.0  
At3g18320.1 68416.m02331 F-box family protein contains Pfam PF00...    28   6.9  

>At1g65210.1 68414.m07393 hypothetical protein
          Length = 248

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 141 RNFSGSSKKSPEKISINNNHFTNTYYISSYIISFHLVSPS*LISQINH 284
           RN  G S ++P    I N H T    + + IIS    SP  LI+ I +
Sbjct: 6   RNLDGPSGRAPTVQQIRNKHGTREVIVDNGIISVSFSSPQGLITGIKY 53


>At3g44120.1 68416.m04730 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 384

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 499 NKKYLCVNPSY--EQSKFYSNQNSSW*QIDNYSVP*HFLRYF 380
           NK Y  ++ +Y  + S+ Y   + SW  ID+   P H++ YF
Sbjct: 157 NKSYKAMSFNYLDKDSEIYEFSSDSWRVIDDIIKPPHYMDYF 198


>At2g07140.1 68415.m00816 F-box family protein contains Pfam:PF00646
           F-box domain ; contains TIGRFAM TIGR01640: F-box protein
           interaction domain ; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 384

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 499 NKKYLCVNPSY--EQSKFYSNQNSSW*QIDNYSVP*HFLRYF 380
           NK Y  ++ +Y  + S+ Y   + SW  ID+   P H++ YF
Sbjct: 157 NKSYKAMSFNYLDKDSEIYEFSSDSWRVIDDIIKPPHYMDYF 198


>At3g18320.1 68416.m02331 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to F-box protein
           family, AtFBX9 (GI0197985){Arabidopsis thaliana]
          Length = 299

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 466 EQSKFYSNQNSSW*QIDNYSVP*HFLRYF 380
           E S+ Y   + SW  ID+   P H++ YF
Sbjct: 85  EDSEIYEFSSDSWRVIDDIIKPPHYMEYF 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,913,230
Number of Sequences: 28952
Number of extensions: 209884
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)