Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0279
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 105 9e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 55 9e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 47 2e-06
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 2e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 40 3e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 38 0.002
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.002
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 36 0.005
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 36 0.008
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 36 0.008
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 34 0.024
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 34 0.024
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 33 0.056
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.075
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 31 0.13
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 31 0.13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 31 0.23
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.23
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.23
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 28 1.2
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 27 2.8
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 2.8
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.7
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 26 4.9
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 6.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 6.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 6.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 8.6
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 8.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 105 bits (251), Expect = 9e-24
Identities = 59/154 (38%), Positives = 78/154 (50%), Gaps = 6/154 (3%)
Frame = +3
Query: 258 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPI 617
K +G++ PTPIQ Q WP+AMSG++ + K + L GDGPI
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 618 ALVLGAYQRVST------TNFSKLLQIXGHTSYG 701
LVL + ++ T F K +I YG
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYG 231
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 55.2 bits (127), Expect = 9e-09
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 7/156 (4%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 431
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 432 GVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDG 611
+ ++GY++PT IQAQ P SG++ + K K R + G+G
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG 491
Query: 612 PIALVLGAYQRVST------TNFSKLLQIXGHTSYG 701
PIA+++ + ++ F KLL I +YG
Sbjct: 492 PIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYG 527
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/31 (54%), Positives = 26/31 (83%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPPI 595
++++GVAKTGSGKT+A++LP HI +Q P+
Sbjct: 456 RDVIGVAKTGSGKTIAFLLPMFRHIKDQRPL 486
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 47.2 bits (107), Expect = 2e-06
Identities = 18/33 (54%), Positives = 28/33 (84%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPPISE 601
K+L+G+A+TGSGKT A+I+P I+ I+ PP++E
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTE 319
Score = 42.7 bits (96), Expect = 5e-05
Identities = 16/57 (28%), Positives = 35/57 (61%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKD 288
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/42 (42%), Positives = 28/42 (66%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
PI F+E + +++G+K YKEPTPIQA WP ++G++
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRD 204
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/26 (50%), Positives = 24/26 (92%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHIN 580
+++VG+A+TGSGKT+A+ +PA+ ++N
Sbjct: 203 RDVVGIAETGSGKTVAFGIPALQYLN 228
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++ +A
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMA 211
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
++L+ A+TGSGKT ++ P +
Sbjct: 207 RDLMACAQTGSGKTAGFLFPIL 228
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPPISER*WSDCFGLGRL 637
++++G AKTGSGKTLA+I+P I ++ + W+ GLG L
Sbjct: 77 RDILGAAKTGSGKTLAFIVPLIENLYRKK------WTSLDGLGAL 115
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/27 (48%), Positives = 23/27 (85%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINN 583
+++VG+A+TGSGKT A+++P I H+ +
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMIEHLKS 133
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ + + + G+K PTPIQ + P+ + G++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRD 108
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQP 589
++++G+A+TGSGKT A+ LP I + N P
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNP 112
Score = 30.3 bits (65), Expect = 0.30
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+E D + + + +G+K PTPIQ + P+ ++ ++
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRD 85
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPPISE 601
K+LV A+TGSGKT AY++P + + Q I E
Sbjct: 52 KDLVAQARTGSGKTAAYLIPILELLLKQKQIDE 84
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 366 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+ +A
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVA 56
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 35.5 bits (78), Expect = 0.008
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
++++G AKTGSGKTLA+++P I
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTI 148
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 33.9 bits (74), Expect = 0.024
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQP 589
K++VG A TGSGKT A+I+P + + +P
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP 325
Score = 30.3 bits (65), Expect = 0.30
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N + +G+ +G++ PT IQ + P+A+ GK+
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKD 298
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 33.9 bits (74), Expect = 0.024
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 542
FE+ + G+ G++ P+PIQ + PIA+SG++ LA K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +2
Query: 446 GLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQ 586
G +R + + ++++ AK G+GKT A+++P++ ++ +
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTK 109
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 32.7 bits (71), Expect = 0.056
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILP 562
K+LV A TGSGKTLAY+LP
Sbjct: 39 KDLVVEAVTGSGKTLAYLLP 58
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
F+ N +++ V G+K+ TP+QA P+ + K+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKD 40
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.075
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 479
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 506 ELVGVAKTGSGKTLAYILPAIVH 574
+++G A TGSGKTLA+ +P + H
Sbjct: 161 DIIGKADTGSGKTLAFGIPILEH 183
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 521 AKTGSGKTLAYILPAIVHINNQP 589
A+TGSGKTLAY+LP + + P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 31.5 bits (68), Expect = 0.13
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQP 589
+ +G AKTGSGKT A+ LP I + P
Sbjct: 45 RNCIGGAKTGSGKTAAFALPIIEKWSKDP 73
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPP 592
++L+ A TGSGKT+AY+ P + + P
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 509 LVGVAKTGSGKTLAYILPAIVHINNQPP 592
L+ V TG GK+L++++PA++ Q P
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.23
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +2
Query: 509 LVGVAKTGSGKTLAYILPAIVHINNQPP 592
L+ V TG GK+L++++PA++ Q P
Sbjct: 1209 LITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 521 AKTGSGKTLAYILPAI 568
A TGSGKTL+Y++P +
Sbjct: 180 AATGSGKTLSYVIPIV 195
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 521 AKTGSGKTLAYILPAIVHINNQPP 592
AKTG+GKTLA++L A + P
Sbjct: 83 AKTGTGKTLAFLLVAFKDVLKGKP 106
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +3
Query: 225 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 386
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 387 IQYFEEANFPDYVQQGVKT 443
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Frame = -2
Query: 237 THVLTSREFF--FPTKSSRSSKS-------IATV--AKSRRIIAEFVASSKFGTTVSTAI 91
T +S EFF +P SS SS S +A+ A S + + + ASS+ T+ S+ +
Sbjct: 138 TSATSSSEFFTSYPATSSESSSSYPASSTEVASSYSASSTEVTSSYPASSEVATSTSSYV 197
Query: 90 IPVT 79
PV+
Sbjct: 198 APVS 201
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 631 APTRELAQQISASCCRFXDTHPMVRNTCVLVVLLKEE 741
APTRELAQQI D + + C+ L++++
Sbjct: 94 APTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDD 130
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 252 IPIWATHVLTSREFFFP-TKSSRSSKSIATVAKSRRIIAEFVASSKFGT 109
I + +T + T+R + TKSS SSK +K+ R + A K GT
Sbjct: 1109 ISLASTSLSTNRSLYTQYTKSSNSSKMTRNTSKNNRRLERKRARGKKGT 1157
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = -1
Query: 184 LQIYCHRCQIE----KNYRRICCLLQIWNHRFHGYYSSYQT*LFFGFS*RCLFKLWI 26
+ +Y Q+E +NY I C L +WN Y +F + +++W+
Sbjct: 164 IHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFLSAKRKSNYQIWL 220
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIV 571
K++ + TG GK+L Y LPA++
Sbjct: 535 KDVFILMPTGGGKSLCYQLPAVI 557
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 93 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 13
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -2
Query: 570 TMAGKM*ANVLPEPVLATPTNSFQT*LSASLELEWASVLCNPLSLHLVAHNQENL 406
++A + A +LP P ++P+++F+T S E + C+P H A+ E++
Sbjct: 4 SVATSLKAEILPSPRTSSPSSNFKT--CVSNENGCINCRCSPSEPHESANVDESV 56
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 447 PLSLHLVAHNQENL--LLQSIE 388
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,361
Number of Sequences: 5004
Number of extensions: 64876
Number of successful extensions: 230
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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