Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0279
(742 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 108 3e-24
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 99 4e-21
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 99 4e-21
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 72 5e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 72 5e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 72 5e-13
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 72 5e-13
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 68 6e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 68 8e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 67 1e-11
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 54 8e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 49 4e-06
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 46 3e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 43 2e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 43 2e-04
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 42 4e-04
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 40 0.001
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 40 0.001
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 40 0.002
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 39 0.004
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 38 0.005
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 38 0.007
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 38 0.009
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 37 0.012
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 37 0.012
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 37 0.012
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.028
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 36 0.028
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 36 0.028
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 35 0.065
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 35 0.065
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 35 0.065
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 33 0.15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 33 0.15
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 33 0.26
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 33 0.26
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.26
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 32 0.35
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 32 0.35
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 32 0.35
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 32 0.35
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 32 0.35
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 32 0.35
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 32 0.46
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 32 0.46
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 31 0.61
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 31 0.61
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 30 1.4
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 30 1.9
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 30 1.9
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 30 1.9
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 3.2
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 3.2
At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar ... 29 3.2
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 29 3.2
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 4.3
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi... 29 4.3
At5g25520.2 68418.m03037 transcription elongation factor-related... 28 5.7
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 5.7
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 28 5.7
At2g25460.1 68415.m03049 expressed protein 28 5.7
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 7.5
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 27 9.9
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 27 9.9
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 27 9.9
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 27 9.9
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 108 bits (260), Expect = 3e-24
Identities = 63/167 (37%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Frame = +3
Query: 237 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 413
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 414 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRL 593
PDYV + VK G+ EPTPIQ+QGWP+AM G++ + + K + +
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166
Query: 594 FRRGDGPIALVLGAYQRVSTTNFSKLLQIXGHTSYGS*HVCVGGAPK 734
GDGPI LVL A R + G +S GG PK
Sbjct: 167 LAHGDGPIVLVL-APTRELAVQIQQEASKFGSSSKIKTTCIYGGVPK 212
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 98.7 bits (235), Expect = 4e-21
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFR 599
+ + + +G+ EPTPIQAQGWP+A+ G++ + + K L +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 600 RGDGPIALVLGAYQRVSTTNFSKLLQIXGHTSYGS*HVCV-GGAPK 734
+ DGPI L+L A R + + G S G C+ GGAPK
Sbjct: 235 QDDGPIVLIL-APTRELAVQIQEESRKFGLRS-GVRSTCIYGGAPK 278
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 98.7 bits (235), Expect = 4e-21
Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 1/166 (0%)
Frame = +3
Query: 240 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 420 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFR 599
+ + + +G+ EPTPIQAQGWP+A+ G++ + + K L +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 600 RGDGPIALVLGAYQRVSTTNFSKLLQIXGHTSYGS*HVCV-GGAPK 734
+ DGPI L+L A R + + G S G C+ GGAPK
Sbjct: 235 QDDGPIVLIL-APTRELAVQIQEESRKFGLRS-GVRSTCIYGGAPK 278
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 5e-13
Identities = 51/148 (34%), Positives = 69/148 (46%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPIALVLGAYQRVS 650
QAQ WPIAM G++ +A K K R R GP LVL + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 651 TTNFSKLLQIXGHTSYGS*HVCVGGAPK 734
T + ++ G +S S GGAPK
Sbjct: 244 TQIQEEAVKF-GRSSRISCTCLYGGAPK 270
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 5e-13
Identities = 51/148 (34%), Positives = 69/148 (46%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPIALVLGAYQRVS 650
QAQ WPIAM G++ +A K K R R GP LVL + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 651 TTNFSKLLQIXGHTSYGS*HVCVGGAPK 734
T + ++ G +S S GGAPK
Sbjct: 244 TQIQEEAVKF-GRSSRISCTCLYGGAPK 270
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 71.7 bits (168), Expect = 5e-13
Identities = 51/148 (34%), Positives = 69/148 (46%)
Frame = +3
Query: 291 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 470
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 471 QAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPIALVLGAYQRVS 650
QAQ WPIAM G++ +A K K R R GP LVL + ++
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 651 TTNFSKLLQIXGHTSYGS*HVCVGGAPK 734
T + ++ G +S S GGAPK
Sbjct: 244 TQIQEEAVKF-GRSSRISCTCLYGGAPK 270
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 71.7 bits (168), Expect = 5e-13
Identities = 34/124 (27%), Positives = 60/124 (48%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGP 614
+K Y++PT IQ Q PI +SG++ + K K + +R +GP
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGP 302
Query: 615 IALV 626
I ++
Sbjct: 303 IGVI 306
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 68.1 bits (159), Expect = 6e-12
Identities = 39/125 (31%), Positives = 58/125 (46%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGP 614
+K + Y++P PIQAQ PI MSG++ + K K L GDGP
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 615 IALVL 629
I LV+
Sbjct: 471 IGLVM 475
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 67.7 bits (158), Expect = 8e-12
Identities = 38/125 (30%), Positives = 58/125 (46%)
Frame = +3
Query: 255 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 434
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGP 614
+K + Y++P PIQ Q PI MSG++ + K K L GDGP
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Query: 615 IALVL 629
I LV+
Sbjct: 604 IGLVM 608
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 67.3 bits (157), Expect = 1e-11
Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 4/158 (2%)
Frame = +3
Query: 273 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 440
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 441 TMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGDGPIA 620
+ G+ PTPIQAQ WPIA+ ++ +A K K R R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 621 LVLGAYQRVSTTNFSKLLQIXGHTSYGS*HVCVGGAPK 734
L+L + ++T + L+ G +S S GGAPK
Sbjct: 511 LILAPTRELATQIQDEALRF-GRSSRISCTCLYGGAPK 547
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 54.4 bits (125), Expect = 8e-08
Identities = 27/87 (31%), Positives = 47/87 (54%)
Frame = +3
Query: 249 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 428
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 429 QGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+ +K G PTPIQ QG P+ +SG++
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRD 136
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 437 KDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIV 571
KD G+ L ++++G+A TGSGKTL ++LP I+
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMII 157
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 48.8 bits (111), Expect = 4e-06
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 464
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 465 PIQAQGWPIAMSGKN 509
PIQ QG P+ ++G++
Sbjct: 171 PIQVQGLPVILAGRD 185
Score = 34.3 bits (75), Expect = 0.086
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIV 571
++++G+A TGSGKTL ++LP I+
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIM 206
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 45.6 bits (103), Expect = 3e-05
Identities = 16/33 (48%), Positives = 28/33 (84%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPPISE 601
++++G+A+TGSGKT A++LP + +I+ PP+SE
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSE 383
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 336 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRD 352
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 339 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 506
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHI 577
+E A TGSGKT A+I P ++ +
Sbjct: 179 RECFACAPTGSGKTFAFICPMLIKL 203
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/25 (64%), Positives = 24/25 (96%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHI 577
++L+G+AKTGSGKTLA+ +PAI+H+
Sbjct: 152 RDLIGIAKTGSGKTLAFGIPAIMHV 176
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 497
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 498 SGKN 509
G++
Sbjct: 150 DGRD 153
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 357 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRD 206
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 434 CKDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQP 589
C+ G ++ ++ + + ++L A TGSGKT A+ LP + + +P
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP 233
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +2
Query: 431 RCKDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQPPISER*W 610
+ K NG++ +S +LVG A+TG GKTLA++LP + + N P S+R
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKR-- 167
Query: 611 SDCFGLGRLPE-----S*HNKFQQVAADFXTH 691
G GR P +QVAADF +
Sbjct: 168 --KMGYGRSPSVLVLLPTRELAKQVAADFDAY 197
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 437 KDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQPPIS 598
KD G + + L K+++ AKTG+GKT+A++LPAI + PP S
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPAS 451
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 315 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 488
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 489 IAMSGKN*LA 518
A++GK+ LA
Sbjct: 143 AALTGKSLLA 152
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
K L+ A TGSGKT ++++P I
Sbjct: 148 KSLLASADTGSGKTASFLVPII 169
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.7 bits (86), Expect = 0.004
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHI 577
+++V +AKTGSGKTL Y++P +H+
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHL 291
Score = 35.9 bits (79), Expect = 0.028
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +3
Query: 435 VKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQPLCT*TTNRLFRRGD-G 611
V + G+ P+PIQAQ WPIAM ++ +A K K R+ G
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM--HLQRIHNDSRMG 301
Query: 612 PIALVLGAYQRVSTTNFSKLLQIXGHTSYGS*HVCVGGAPK 734
P LVL + ++T + L+ G +S S GGAPK
Sbjct: 302 PTILVLSPTRELATQIQVEALKF-GKSSKISCACLYGGAPK 341
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 330 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 419
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 437 KDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQPPIS 598
KD G + + L K+++ AKTG+GKT+A++LP+I + PP S
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTS 123
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 261 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 437
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 438 KTMGYKEPTPIQAQGWPIAMSGKN*LA 518
+ Y +PTP+Q PI + G++ +A
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMA 201
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
++L+ A+TGSGKT A+ P I
Sbjct: 197 RDLMACAQTGSGKTAAFCFPII 218
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPPIS 598
K+++ AKTG+GKT+A++LP+I + PP S
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPAS 149
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 437 KDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAI 568
K+ G R + + + ++++G A+TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +3
Query: 264 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 444 MGYKEPTPIQAQGWPIAMSGKN 509
MG+ T IQA+ P M G++
Sbjct: 172 MGFARMTQIQAKAIPPLMMGED 193
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQPPISER 604
K++V AKTGSGKTLAY+LP + + + +S++
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKK 117
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 324 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 504 KN*LA 518
K+ +A
Sbjct: 84 KDVVA 88
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 437 KDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAI 568
K+ G Q + + K+++G A+TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/43 (32%), Positives = 30/43 (69%)
Frame = +2
Query: 458 TDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQ 586
TD S++ + + ++++G A+TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
FE N V +K GYK PTPIQ + P+ +SG
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSG 65
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 506 ELVGVAKTGSGKTLAYILPAIVHINNQPP 592
++V +A+TGSGKT A+++P + + P
Sbjct: 67 DVVAMARTGSGKTAAFLIPMLEKLKQHVP 95
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 35.9 bits (79), Expect = 0.028
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +2
Query: 434 CKDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQP 589
CK+ G+++ + + ++++G+A+TGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
FE ++ + K +G ++PTP+Q P ++G++
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRD 97
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 34.7 bits (76), Expect = 0.065
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 267 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 443
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 444 MGYKEPTPIQAQGWPIAMSGKN*LA 518
Y +PTP+Q PI +G++ +A
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMA 188
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
++L+ A+TGSGKT A+ P I
Sbjct: 184 RDLMACAQTGSGKTAAFCFPII 205
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 34.7 bits (76), Expect = 0.065
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +2
Query: 491 SYVWKELVGVAKTGSGKTLAYILPAI 568
+Y K+++G A+TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 34.7 bits (76), Expect = 0.065
Identities = 29/114 (25%), Positives = 52/114 (45%)
Frame = +3
Query: 384 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAKRWPTSCQ 563
PI+ F++ D V +GV GYK+P+ IQ + + G++ +A + K +
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 564 PLCT*TTNRLFRRGDGPIALVLGAYQRVSTTNFSKLLQIXGHTSYGS*HVCVGG 725
+C N R+ LVL + +++ + I HT+ + H C+GG
Sbjct: 80 -VCQ-IVNISSRKVQ---VLVLSPSRELASQTEKTIQAIGAHTNIQA-HACIGG 127
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
++L+ A+TGSGKT A+ P I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPII 210
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 354 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA 518
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++ +A
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMA 193
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
++L+ A+TGSGKT A+ P I
Sbjct: 189 RDLMACAQTGSGKTAAFCFPII 210
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 542
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 542
FE+ + G+ G++ P+PIQ + PIA++G++ LA K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 437 KDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQPPISE 601
+D+G R + + K+++ A+TGSGKT Y+ P I + N SE
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSE 150
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN*LA*PKRVPAK 542
FE+ + +G+ G+++P+PIQ + PIA++G + LA K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 521 AKTGSGKTLAYILPAIVHINNQPPISER 604
A TG+GKT+AY+ P I H+ P +R
Sbjct: 74 APTGTGKTIAYLAPLIHHLQGHSPKVDR 101
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 444 MGYKEPTPIQAQGWPIAMSGKN 509
MG++ PT +QAQ P+ +SG++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRD 69
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHI---NNQPP 592
K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHI---NNQPP 592
K++V A TGSGKTLA++LP I I N+ PP
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +3
Query: 372 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 509
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKD 48
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +2
Query: 434 CKDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAI 568
C+ G + + L + K+++G+A+TGSGKT A+ +P +
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +2
Query: 437 KDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAI 568
K G+++ + L + ++++G A+TG+GKTLA+ +P I
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +2
Query: 443 NGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAI 568
+G+ + + L++ K+ + AKTG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +2
Query: 443 NGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAI 568
+G+ + + L++ K+ + AKTG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
++++G A+TG+GKTLA+ +P I
Sbjct: 142 RDMIGRARTGTGKTLAFGIPII 163
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQ 586
++++ AKTG+GKTLA+ +P I + +
Sbjct: 140 RDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
K +V + TGSGKTLAY+LP +
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIV 171
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQPPISER 604
TGSGKTLAY+LP + I P++E+
Sbjct: 156 TGSGKTLAYLLPILSEIG---PLAEK 178
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 396 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 503
FEE PD + ++ G+ PT +Q+ P + G
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKG 147
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 234 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 413
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 414 PDYVQQGVKTM 446
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 234 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 413
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 414 PDYVQQGVKTM 446
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar to
guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
thaliana]; identical to cDNA putative guanylate cyclase
GI:21436486
Length = 274
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 710 VLRTIGCVSXNLQQLAEICCANSL 639
VLR G S L+ LAEIC NS+
Sbjct: 78 VLRASGIASCTLEDLAEICSTNSI 101
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 500 WKELVGVAKTGSGKTLAYILPAI 568
+K++ A TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -2
Query: 246 IWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKF-GTTVSTAIIPVTRH- 73
+W VL + F F K R ++S A +R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 72 -DYFSDLVEDVYLNYGFFLTQGPP 4
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 501
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 467 HSSSRLADSYVWKELVGVAKTGSGKTLAYILPAIVHINNQPP 592
H SS DS++ ELV V+ K LA+ ++H ++ P
Sbjct: 37 HLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDSTP 78
>At5g25520.2 68418.m03037 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 997
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 434 CKDNGLQRTDAHSSSRLADSYVWKELVGVAKTGSGKTLAYILPAI 568
CK NG+ ++ S +A SYV + VG A+ SG L Y+ P +
Sbjct: 722 CK-NGISQSQRDSLIEVAKSYVADQRVGYAEPTSGVEL-YLCPTL 764
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -2
Query: 207 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 28
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAIVHINNQ 586
K + ++GSGKTLAY++P I + +
Sbjct: 412 KSCIIADQSGSGKTLAYLVPVIQRLREE 439
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 154 EKNYRRICCLLQIWNHRFHGYY 89
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 527 TGSGKTLAYILPAIVHINNQP 589
TGSGKTL+Y LP + + ++P
Sbjct: 71 TGSGKTLSYALPIVQLLASRP 91
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 503 KELVGVAKTGSGKTLAYILPAI 568
K L+ A TGSGKT ++++P I
Sbjct: 11 KSLLASADTGSGKTASFLVPII 32
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 YDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 461
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 462 TPIQAQGWPIAMS 500
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,311
Number of Sequences: 28952
Number of extensions: 341641
Number of successful extensions: 1096
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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