Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0278
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    25   0.39 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.69 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.9  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.4  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 481 KRVTFFFSVCCGYSFDFI 534
           KRV FFFS CC   F ++
Sbjct: 7   KRVLFFFSFCCILFFIYL 24


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 0.69
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 188 IRVPRSTRRGHSLPGATETPGPLLAGNSSAADLG 289
           ++VP+  RR  + PG   TP    A  SSA  +G
Sbjct: 34  VQVPQGGRRRAARPGVVTTPRWGCARASSATTMG 67


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 611 EHITHLHAHRNELTNIYIGAIQFFFLIKSKL*PQHTEKKNVTR 483
           E IT+     N   N+     +FF LIK K  P   +KK++ +
Sbjct: 55  ERITYSWTEINAFANVSPSKTKFFNLIKRKDSP--VQKKHILK 95


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 611 EHITHLHAHRNELTNIYIGAIQFFFLIKSKL*PQHTEKKNVTR 483
           E IT+     N   N+     +FF LIK K  P   +KK++ +
Sbjct: 55  ERITYSWTEINAFANVSPPKTKFFNLIKRKDSP--VQKKHILK 95


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +1

Query: 487 VTFFFSVCCGY 519
           + FFF++CC +
Sbjct: 74  IFFFFAICCDF 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,311
Number of Sequences: 336
Number of extensions: 3115
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)