Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0278
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   5.2  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   6.8  

>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 406 FGPILCKQVTFFFFSLWPGILPLGQKRVTFFFSVCCGYSF 525
           FGP     V    FS +   +PL  K +  F S+ CG  F
Sbjct: 251 FGPFWTSFVNSCLFSAFDATIPLELKTLFDFNSLQCGLMF 290


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 216 DTRYRERQRLRALY*LETPQPLTSDPRFVSK 308
           +T+  +  R RALY L   QP+   P  V K
Sbjct: 478 ETKLGDSDRARALYNLAVNQPILETPELVWK 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,140
Number of Sequences: 5004
Number of extensions: 50305
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)