Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0278
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0829 - 21604845-21605588 29 2.3
01_01_0114 - 851249-852372,852577-852740,852838-853568 29 2.3
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 29 3.0
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689... 29 4.0
01_01_0578 - 4296867-4296913,4296927-4297015,4297270-4297394,429... 29 4.0
11_01_0749 - 6305087-6307522 28 7.0
11_06_0080 - 19880319-19880957,19881800-19881948,19882266-198835... 27 9.3
10_08_0882 - 21275285-21275306,21275822-21275946 27 9.3
08_02_0973 - 23198643-23198996,23199019-23199124,23199377-23199558 27 9.3
03_02_0323 - 7450996-7451229,7451320-7451469,7451571-7451718,745... 27 9.3
>08_02_0829 - 21604845-21605588
Length = 247
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Frame = -3
Query: 312 PALKRSVGPRSAAEEFPANKGPGVSVA----PGSECPLRVDLGTRIHSNVRQPESFCRSK 145
PA G A E + A+K PG SVA SE P R D R +N + K
Sbjct: 50 PASNPKPGRADAVERWDAHKKPGYSVASSSSSSSEIPCRADACERWDANKNK-------K 102
Query: 144 AGRSI*LYTTSARSGSRHRRS 82
AG S +TS SG R+
Sbjct: 103 AGGSAASSSTSKASGGNPGRA 123
>01_01_0114 - 851249-852372,852577-852740,852838-853568
Length = 672
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 28 GRENRCSTGSCTCLDRACAPSVSATTPSRCGVKLY 132
GR ++C + SC L AP A P CG K Y
Sbjct: 32 GRHHKCPSFSCGHLKGVSAPFRRAADPPGCGSKSY 66
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 29.1 bits (62), Expect = 3.0
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Frame = -3
Query: 285 RSAAEEFPANKGPGVSVAPGSECPLRVDLGTRIHSNVRQPESFCRSKAGRSI*LYTTSAR 106
+S A+E + G A P R + + +N R PESF + G +AR
Sbjct: 621 KSCAKERTELQAVGKHKASSVNLPPREMFTSNVRAN-RVPESFRKPNKG-----IQETAR 674
Query: 105 SGSRHRRSTRPVQAR---TRARGAPIFPPNRRSP 13
S +S P Q R TRA P PP R P
Sbjct: 675 SQISSSKSATPAQTRSIKTRAPNPPPPPPPPRRP 708
>02_05_0790 -
31768131-31768269,31768343-31768503,31768845-31768973,
31769770-31769912,31770215-31770332,31771070-31771144,
31771528-31771620,31771750-31771879,31772038-31772126,
31772411-31772506,31772610-31772900
Length = 487
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 176 FANPKVFAEVRRVAVYSFTPHRLGVVADTDGAHARSRHVQEPVEHRFSLP 27
F PKV AE + RLG+ + G SR V + V + +S+P
Sbjct: 196 FGMPKVRAESELLQAIILLFERLGITSSDVGIRVSSRKVLQAVLNMYSIP 245
>01_01_0578 -
4296867-4296913,4296927-4297015,4297270-4297394,
4297476-4297522,4297864-4298222,4298386-4298552,
4298800-4298846,4299148-4299193,4299586-4299669,
4300801-4300869
Length = 359
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -1
Query: 164 KVFAEVRRVAVYSFTPHRLGVVADTDGAHARSRHVQEPVEHRFSLPIDAVLFH 6
K FA++ + + FTPH A+ HA++R + VE FS ++ L H
Sbjct: 241 KDFAKLYSIFIAKFTPHGCLHFANNFLKHAQNRFMLHEVEAAFSNCLEEYLPH 293
>11_01_0749 - 6305087-6307522
Length = 811
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 28 GRENRCSTGSCTCLDRACAPSVSATTPS 111
G N C++G C C+D CA ++ TP+
Sbjct: 352 GSANLCASGRCICVD--CAFELNVATPN 377
>11_06_0080 -
19880319-19880957,19881800-19881948,19882266-19883589,
19883766-19883953,19884034-19884499
Length = 921
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 217 TLATGSDRDSGPFISWKLLSR*PRTHASFQSGPIH 321
T+AT S S PF W + + SF++ P+H
Sbjct: 533 TVATWSRISSNPFEDWHQNCKLDASQVSFENNPVH 567
>10_08_0882 - 21275285-21275306,21275822-21275946
Length = 48
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 203 STRRGHSLPGATETPGPLLAGNSSAAD 283
S R GHSLP T P ++G ++A D
Sbjct: 7 SQRHGHSLPTLKATSAPYVSGPANAHD 33
>08_02_0973 - 23198643-23198996,23199019-23199124,23199377-23199558
Length = 213
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 1 DAWKRT-ASIGRENRCSTGSCTCLDRACAP 87
DAW+R A+IGRE+ CS C+ R P
Sbjct: 145 DAWERAAATIGRES-CSNSGCSARRRRMDP 173
>03_02_0323 -
7450996-7451229,7451320-7451469,7451571-7451718,
7451816-7451895,7451990-7452150,7452417-7452665,
7452747-7453211,7453306-7453421,7453529-7453647,
7453749-7453834,7453970-7454120
Length = 652
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 25 IGRENRCSTGSCTCLDRACAPSVSATT 105
IG + S G TCL + CA + ATT
Sbjct: 110 IGANKKYSFGGSTCLAKYCAKKLPATT 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,892,873
Number of Sequences: 37544
Number of extensions: 350317
Number of successful extensions: 935
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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