Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0278
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2021| Best HMM Match : PAN (HMM E-Value=4.8e-07)                    33   0.25 
SB_29668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  29   2.4  
SB_20112| Best HMM Match : EGF (HMM E-Value=0)                         29   4.1  
SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28)                  29   4.1  
SB_45446| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          28   7.2  
SB_15269| Best HMM Match : DUF1289 (HMM E-Value=3.5)                   27   9.5  
SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)                  27   9.5  

>SB_2021| Best HMM Match : PAN (HMM E-Value=4.8e-07)
          Length = 119

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 162 FRVGERCCEFECLDPPG-EDTRYRERQR 242
           +RV E  C FECLD P  E   YR  +R
Sbjct: 51  YRVSENTCTFECLDDPSCESVNYRHDER 78


>SB_29668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 123 KAIYCDPPYFCKNFRVGERCCEFECLDPPGEDTRYRERQRLRAL 254
           K ++ +PP   K  R+    C   C D  GE TR ++ +  + L
Sbjct: 1   KILHPEPPQTVKRSRIDNADCFIHCSDDNGELTRLKDTESWKTL 44


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/84 (29%), Positives = 33/84 (39%)
 Frame = -3

Query: 300 RSVGPRSAAEEFPANKGPGVSVAPGSECPLRVDLGTRIHSNVRQPESFCRSKAGRSI*LY 121
           RS  PRS     P  +    S +P            R  S  R P+S  RS++     + 
Sbjct: 283 RSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRIR 342

Query: 120 TTSARSGSRHRRSTRPVQARTRAR 49
             S     R RRS  P + RTR+R
Sbjct: 343 YRSRSRPPRGRRSQSPRRRRTRSR 366


>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2112

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 34   ENRCSTGSCTCLDRACAPSVSATTPSRCGVKLYTATRLTSAKTFGLAN 177
            +  C+TG C      C PSV      +CG   Y A R  +A+   + N
Sbjct: 1168 DRECNTGGCLFDGFDCKPSV-----PKCGADKYCAARFANAECDAICN 1210


>SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28)
          Length = 447

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +1

Query: 16  TASIGRENRCSTGSCT---CLDRACAPSVSATTPSRCGVKLYTATRLTSAKTFGLANVAV 186
           T  IG    C+TG CT   C    C   +  T     G+   T    T   T G+    +
Sbjct: 384 TTGIGTTGICTTGICTTGICTTGICTTGICTTGICTTGI-CTTGINTTGINTTGIFTTGI 442

Query: 187 NSS 195
           N++
Sbjct: 443 NTT 445


>SB_45446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = +1

Query: 73  RACAPSVSATTPSRCGVKLYTATRLTSAKTFGLANVAVNSSA*IHPERTLATGSDRDSGP 252
           +  AP ++ +TP+RC V    A  L+   +FG   +   S        T  TG   D G 
Sbjct: 344 KGSAPPLAGSTPARC-VDSIRARLLSRGFSFGATKIICQS-------WTTGTGKQYD-GA 394

Query: 253 FISWKLLSR*PRTHASFQSGPI 318
           +  W+   R  R+H  FQ+  I
Sbjct: 395 WSKWESWCR-ERSHDPFQASEI 415


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 126 LYTTSARSGSRHRRSTRPVQA-RTRARGAPIFPPNRRSPLP 7
           L  T A   S    STRP QA  +    AP  PP RR P P
Sbjct: 435 LALTIALFASNLNDSTRPDQAPASSGNAAPRTPPRRRHPRP 475


>SB_15269| Best HMM Match : DUF1289 (HMM E-Value=3.5)
          Length = 195

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 117 TSARSGSR--HRRSTRPVQARTRARGAPIFPPNRRS 16
           T+A SGS+  HR   +P +  +R+R   IFP + ++
Sbjct: 3   TTAESGSKKAHRAQLKPARLLSRSRNNQIFPHSAKA 38


>SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)
          Length = 1115

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +2

Query: 197 PRSTRRGHSLPGATETPG 250
           PR+ R G   PGAT TPG
Sbjct: 185 PRTDRMGAETPGATPTPG 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,487,591
Number of Sequences: 59808
Number of extensions: 400273
Number of successful extensions: 2599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2598
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)