Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0278
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   9.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.9  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 514 GYSFDFIKKKNCI 552
           GY+FDF  K N I
Sbjct: 392 GYNFDFQNKNNLI 404


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 514 GYSFDFIKKKNCI 552
           GY+FDF  K N I
Sbjct: 392 GYNFDFQNKNNLI 404


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 276 PLTSDPRFVSKRAY 317
           PLT  PRF+   AY
Sbjct: 150 PLTPFPRFIPPNAY 163


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 276 PLTSDPRFVSKRAY 317
           PLT  PRF+   AY
Sbjct: 391 PLTPFPRFIPPNAY 404


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 573 NEYLYWRNTI-FFFNKIKTITTAHRK 499
           N+  ++R+ + F+F K K  + AH+K
Sbjct: 3   NQKEHYRHILLFYFRKGKNASQAHKK 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,089
Number of Sequences: 438
Number of extensions: 3594
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)