Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0278
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    30   1.1  
At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative ...    30   1.1  
At4g04920.1 68417.m00715 expressed protein                             29   3.4  

>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 153 RSKAGRSI*LYTTSAR--SGSRHRRSTRPVQARTRARGAPIFPPNRRSPLP 7
           RS  G      ++SA+  SGSR RR   P+    RAR  P+ PP R  P+P
Sbjct: 514 RSARGAGSRAPSSSAKRASGSRGRRPRPPLPPPARAR--PLPPPARARPMP 562


>At2g19880.1 68415.m02324 ceramide glucosyltransferase, putative
           similar to ceramide glucosyltransferase (GI:14718995)
           [Gossypium arboreum]; weak similarity to Ceramide
           glucosyltransferase  (Glucosylceramide synthase) (GCS)
           (UDP-glucose:N-acylsphingosine D-glucosyltransferase)
           (GLCT-1) (Swiss-Prot:Q16739) [Homo sapiens]
          Length = 519

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = -1

Query: 599 HLHAHRNELTNIYIGAIQFFFLIKSKL*PQHTEKKNVTRFWXXXXXXXXXXXXKNVTCLH 420
           +LH  R+++T++Y G ++F F+++S   P +     +   +             + TC  
Sbjct: 99  NLHNWRSQITSLYGGPLEFLFVVESTEDPAYHAVSRLLSMYQDHVEAKVVVAGLSTTCSQ 158

Query: 419 KI 414
           KI
Sbjct: 159 KI 160


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 207 VDLGTRIHSNVRQPESFCRSKAGRSI*LYTTSARSGSRHRRSTRPVQARTRARGAPIFP 31
           +DL +   + +R+  SFCR+ A      +  SA +GS     T P Q  +      +FP
Sbjct: 813 LDLASHFITRLRRYASFCRTLAS-----HAASAGTGSNRNNVTSPTQNASSPATPQVFP 866


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,424,240
Number of Sequences: 28952
Number of extensions: 272233
Number of successful extensions: 667
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)