Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0276
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    49   9e-07
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   1.8  
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.8  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   3.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   4.1  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   7.1  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   9.4  

>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 26/74 (35%), Positives = 41/74 (55%)
 Frame = +1

Query: 259 KKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMG 438
           K+   AG AF  AA++ LK   + DAA+ +V+A   Y++   +EA   L  AIE++T  G
Sbjct: 49  KQGSAAGYAFEKAAEMQLKTDDKDDAASTYVEAFKSYRREKPSEAARVLQIAIELFTRRG 108

Query: 439 RFTVAAKQHQNIAE 480
            F  AA    ++ +
Sbjct: 109 NFRRAANYKMDLGD 122



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +3

Query: 633 AIQIYEQIAKSSLDNSLLKYSAKEYMFPKPPC 728
           AI+ +EQ+A++S+ N+LLK+S K+Y+     C
Sbjct: 174 AIRKFEQVARASVQNNLLKWSVKDYLLKAGLC 205



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 506 RRAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLEHY 625
           + A+  YE A +++  +++ + ANK  LK A  A     Y
Sbjct: 132 KAALGAYEDAGEWYSSDQADALANKAYLKAADLAGLCGEY 171


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 645 YEQIAKSSLDNSLL-KYSAKEYMFPKPPCAT 734
           Y+ I+ +SL   LL +YS  EY  P+PP  T
Sbjct: 92  YKDISNTSLPIELLPEYSTIEYTLPRPPQLT 122


>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 206 IEEAVDCYLRAANLFKRPRSGLKQGRLSVMQHSS 307
           +EE  D Y+R + +F + RS LK+ R   +QH++
Sbjct: 97  VEEMKD-YMRLSIIFTKNRSNLKRKRKKTVQHNA 129


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +1

Query: 295  AAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVA 453
            A   ++ A  +HDA    +DA+    + ++  A   +++ I+I +DM R+ V+
Sbjct: 1090 ATSCYMNALAKHDAGEIQLDANLFQSQIESLIANDRIVEGIQIVSDMKRYNVS 1142


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 489 SRTLRNVLVLFGSHSETTHIGVDLDRFQETGHGLVSIT 376
           S+T+    + FG+     H GV   R  ++G+G+V ++
Sbjct: 439 SKTICREYIQFGNAFNLMHCGVSYVRRHQSGYGVVGVS 476


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 343 NFVDASNCYKKCDANEAVSCLLK 411
           N+ +ASNCY+  D     +C +K
Sbjct: 319 NYREASNCYRALDRTYVQNCRIK 341


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 724 PVPLCVDILNAQTPSRSTVLC 786
           P+ L   ++N+ +PS STVLC
Sbjct: 356 PMELFPQVINSCSPSSSTVLC 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,718
Number of Sequences: 5004
Number of extensions: 44233
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)