Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0276
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_1083 + 11096520-11096664,11097543-11097592,11097682-110977... 71 1e-12
02_05_0664 + 30717551-30719491 31 0.79
04_04_1169 - 31446291-31446395,31446789-31446918,31447047-314471... 31 1.0
04_03_1015 - 21734381-21736534 29 3.2
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 29 4.2
11_06_0014 - 19267601-19267831,19268338-19268454,19268733-192688... 29 5.6
06_01_1018 - 7964752-7964847,7964976-7967048 29 5.6
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 7.4
04_04_0500 - 25677767-25680850 28 9.8
>08_01_1083 +
11096520-11096664,11097543-11097592,11097682-11097754,
11099122-11099201,11099354-11099505,11100653-11100812,
11100886-11100933,11101118-11101198,11101517-11101597
Length = 289
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +1
Query: 256 AKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDM 435
AK W +A Q + A HLK +H+AA+ +V+A+NCYKK EA L +A++++ ++
Sbjct: 46 AKNWSRAAQVYIKIANCHLKGDSKHEAASAYVEAANCYKKFSPQEAAQALNQAVDLFLEI 105
Query: 436 GRFTVAAKQHQNIAE 480
GR +AA+ ++I E
Sbjct: 106 GRLNMAARYCKDIGE 120
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 509 RAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLEHYDKGH 637
+A + E++AD F E +S +N K+A+ AAQLE Y K +
Sbjct: 130 KASDYLEKSADLFDSEGQSSQSNSIKQKVAEIAAQLEQYQKAN 172
Score = 34.7 bits (76), Expect = 0.085
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 630 RAIQIYEQIAKSSLDNSLLKYSAKEYMFPKPPCATVRRHTER-ANALEKYSSLYP 791
+A +I+E IA+ ++N+LLKYS + + C R N++E+Y + P
Sbjct: 170 KANEIFEAIARQQINNNLLKYSVRGILLNAGICQLCRGDVVAITNSMERYQDIDP 224
>02_05_0664 + 30717551-30719491
Length = 646
Score = 31.5 bits (68), Expect = 0.79
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -2
Query: 788 IQRTVLLEGVCAFSMSTHSGTGRLRKHVLLRTVLEQAVVQGRLGDLLVDLYGPCRS 621
+ R L GV A + +GR L+R +L+ V+Q G LVD+YG C +
Sbjct: 360 VDRFTLGSGVTACARLADIDSGRAFHGYLVRRLLDTDVIQ---GSALVDMYGKCHN 412
>04_04_1169 -
31446291-31446395,31446789-31446918,31447047-31447126,
31447396-31447474,31448178-31448315,31448386-31448522
Length = 222
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 247 IQEAKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDA-NEAVSCLLKAIEI 423
++E K A + AA L++K DAA F+ + KC+A N L AI I
Sbjct: 67 LEEDGKEQMAFDLYRAAASLYVKLEKYSDAAATFLRLGSAADKCNAINSQCKGYLSAIII 126
Query: 424 YTDMGRFTVAAKQHQNIAE 480
Y F A K + + +E
Sbjct: 127 YLYAHDFQQAQKCYNDCSE 145
>04_03_1015 - 21734381-21736534
Length = 717
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 764 GVCAFSMSTHSGTGRLRKHVLLRTVLEQAVVQGRLGDLLVDLYGPCRSARAGRR 603
G CA + H G +L H+ R + LG LVD+YG C + RR
Sbjct: 161 GCCAECLDLH-GARQLHGHIAKRDFQSNVI----LGTALVDVYGKCFALSEARR 209
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -2
Query: 455 AATVKRPISV*ISIAFRRQDTASLASHFL*QLEASTKLVAASWRTPAFKWSCAALQKAC 279
A T+ P + + +FR + TA+ S + + VA W+T W+CAA C
Sbjct: 91 ARTLALPATPASACSFRLRATAARDSPLPSLFDEAFPFVAVEWKTIVKGWACAAAAVYC 149
>11_06_0014 -
19267601-19267831,19268338-19268454,19268733-19268890,
19269501-19269612,19269721-19269908,19270344-19270436,
19270521-19270708,19271635-19271720,19272662-19272811,
19273930-19274065,19274143-19274222,19275546-19275626,
19276114-19276245,19276490-19276610,19277457-19277518,
19277846-19277974,19278514-19278573,19278689-19278772,
19278852-19279532
Length = 962
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = -2
Query: 701 LRTVLEQAVVQGRLGDLLVDLYGPCRSARAGRRTAPA 591
L TVL + VVQ + GD VD CR R APA
Sbjct: 156 LLTVLPEEVVQDQSGDTGVDAAARCRFTRELMAHAPA 192
>06_01_1018 - 7964752-7964847,7964976-7967048
Length = 722
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = -2
Query: 791 WIQRTVLLEGVCAFSMSTHSGTGRLRKH--VLLRTVLEQAVVQGRLGDL-LVDLYG 633
W QR + GV A + H G ++ H V VL + RLGD L LYG
Sbjct: 470 WAQRVRAIRGVAAGLLYLHEGWEQVVVHRDVKASNVLLDGEMDARLGDFGLARLYG 525
>06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 781 ELYFSRAFARSVCRRTVAQGGFGNMY 704
ELY+ R+ +R C+R AQGG N+Y
Sbjct: 1316 ELYYIRSLSR--CKRWSAQGGKSNVY 1339
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 668 GRLGDLLVDLYGPCRSARAG 609
GRLGD LV+LY C+S R G
Sbjct: 91 GRLGDSLVELY--CKSGRVG 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,584,280
Number of Sequences: 37544
Number of extensions: 331156
Number of successful extensions: 924
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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