Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0276
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46161| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)              28   10.0 
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)            28   10.0 

>SB_46161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
 Frame = +1

Query: 256 AKKWPQAGQAFCNAAQLHLKA-GVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTD 432
           AKKW  AG AF  AA++  ++   +H+AA ++VDA  C+KK D  EAV    +AI+I+TD
Sbjct: 55  AKKWSAAGTAFLEAAKIQRESLQSKHEAAQSYVDAGTCFKKADNEEAVKAYGEAIDIFTD 114

Query: 433 M 435
           M
Sbjct: 115 M 115



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 22/53 (41%), Positives = 34/53 (64%)
 Frame = +3

Query: 630 RAIQIYEQIAKSSLDNSLLKYSAKEYMFPKPPCATVRRHTERANALEKYSSLY 788
           +AI+IYEQ+A  ++++S+LKYSAK+Y F    C       E   A+EKY  ++
Sbjct: 142 KAIEIYEQVAADAIESSILKYSAKDYFFKAALCHMCVDVLEAQRAVEKYCDMH 194



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
 Frame = +2

Query: 512 AMQHYEQAADYFRGEE--STSSANKCMLKLAQYAAQLEHYDK 631
           A++ Y +A D F      S+SSANKC LK+A +AAQ+E+Y K
Sbjct: 101 AVKAYGEAIDIFTDMLFLSSSSANKCALKVALFAAQMENYSK 142


>SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 386 TRPCPVS*KRSRSTPIWVVSLWLPNNTRTLRSVRDGVR 499
           + PCP   ++  ++P+   ++ L   TRTL  + +GVR
Sbjct: 254 SHPCPPRKRQRANSPVPAAAVVLDPQTRTLEQMLNGVR 291


>SB_58139| Best HMM Match : Tetraspannin (HMM E-Value=0.2)
          Length = 108

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 411 SDRDLHRYGSFHCGCQTTPEHCGVYETECVDLAG 512
           +D D +RY  F CG   +PE CGV  T CV   G
Sbjct: 77  NDWDANRY--FKCG-GPSPEECGVPHTCCVKKDG 107


>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
          Length = 1451

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 645  YEQIAKSSLDNSLLKYSAKEYMFPKPPCATVRRHTERANALEKYSSL 785
            YE+++KSS D + L     E        +T  R+ +RA   E Y  L
Sbjct: 1389 YEELSKSSPDYASLNSVQSEDQHQYSSLSTKNRYLQRAQTTEAYEEL 1435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,188,450
Number of Sequences: 59808
Number of extensions: 377270
Number of successful extensions: 1146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)