Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0276
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                27   0.26 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   7.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 334 HHGEHQLSSGAVLHYRKPALL 272
           HH  HQ  S   LHYR+P  L
Sbjct: 352 HHHHHQTQSLQHLHYRQPPTL 372


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 674 VQGRLGDLLVDLYGPC 627
           +Q  +G+ L+ +YGPC
Sbjct: 209 LQRHMGNFLIQVYGPC 224


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 773 LLEGVCAFSMSTHSGTGRLRKHVLLRTVLEQAVVQGRLGDLLV 645
           ++ G C+          R +K  LL+ +LE+    G LG  LV
Sbjct: 414 IVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLV 456


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 642 IYEQIAKSSLDNSLLKYSAKEYMFPK 719
           +Y ++  S   +   KYS++ Y FP+
Sbjct: 575 LYNRLVVSEDGSETFKYSSQPYGFPE 600


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 642 IYEQIAKSSLDNSLLKYSAKEYMFPK 719
           +Y ++  S   +   KYS++ Y FP+
Sbjct: 575 LYNRLVVSEDGSETFKYSSQPYGFPE 600


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,428
Number of Sequences: 438
Number of extensions: 3108
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)