Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0276
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 ...    87   2e-17
At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 ...    51   1e-06
At5g60310.1 68418.m07559 lectin protein kinase, putative similar...    30   2.0  
At5g60300.2 68418.m07558 lectin protein kinase family protein co...    30   2.0  
At5g60300.1 68418.m07557 lectin protein kinase family protein co...    30   2.0  
At5g41390.1 68418.m05029 hypothetical protein contains 1 predict...    28   6.2  
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    28   6.2  
At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family pr...    28   8.2  
At5g60320.1 68418.m07560 lectin protein kinase family protein co...    28   8.2  
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c...    28   8.2  
At3g23020.1 68416.m02902 pentatricopeptide (PPR) repeat-containi...    28   8.2  

>At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 /
           alpha-SNAP2 / ASNAP2 identical to alpha-soluble NSF
           attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from
           [Arabidopsis thaliana]
          Length = 289

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 36/75 (48%), Positives = 52/75 (69%)
 Frame = +1

Query: 256 AKKWPQAGQAFCNAAQLHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDM 435
           AK W QAG+A+   A  HLK+  +HDAA  + +A+ CYKK D NEA SCL +A+ I+ ++
Sbjct: 46  AKSWDQAGKAYLKLADCHLKSDSKHDAANAYAEAAKCYKKVDTNEAASCLERAVNIFCEI 105

Query: 436 GRFTVAAKQHQNIAE 480
           GR  +AA+ ++ IAE
Sbjct: 106 GRLNMAARYYKEIAE 120



 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 24/41 (58%), Positives = 36/41 (87%)
 Frame = +2

Query: 509 RAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLEHYDK 631
           +A+ ++E+AA++F+ EE T+SAN+C LK+AQYAAQLE Y+K
Sbjct: 130 QAIAYFEKAAEFFQNEEVTTSANQCNLKVAQYAAQLEQYEK 170



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +3

Query: 630 RAIQIYEQIAKSSLDNSLLKYSAKEYMFPKPPCATVRRH-TERANALEKYSSLYP 791
           +AI+IYE IA+ SL+N+LLKY  K ++     C   +       NALEKY  L P
Sbjct: 170 KAIKIYEDIARHSLNNNLLKYGVKGHLLTAGMCHLCKADVVSITNALEKYQDLDP 224


>At3g56450.1 68416.m06278 alpha-soluble NSF attachment protein 1 /
           alpha-SNAP1 (ASNAP1) identical to alpha-soluble NSF
           attachment protein 1 (Alpha-SNAP1) (N-
           ethylmaleimide-sensitive factor attachment protein,
           alpha 1) (Swiss-Prot:Q9LXZ5) [Arabidopsis thaliana]
          Length = 381

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/41 (53%), Positives = 33/41 (80%)
 Frame = +2

Query: 509 RAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLEHYDK 631
           +A+ +YE AA++F+ EE T+SAN+C LK+AQYA+QLE   +
Sbjct: 184 QAIAYYETAAEFFQIEEVTTSANQCNLKVAQYASQLEQQSR 224



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 256 AKKWPQAGQAFCNAAQLHLKA 318
           AK W QAG A+   A  HLKA
Sbjct: 134 AKSWDQAGIAYLKLADCHLKA 154


>At5g60310.1 68418.m07559 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 616

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 791 WIQRTVLLEGVCAFSMSTHSGTGR--LRKHVLLRTVLEQAVVQGRLGD 654
           W QR V+++G+ +     H+G  +  L + +    ++  A   GRLGD
Sbjct: 438 WPQRLVIIKGIASALCYLHTGADQVVLHRDIKASNIMLDAEFNGRLGD 485


>At5g60300.2 68418.m07558 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 791 WIQRTVLLEGVCAFSMSTHSGTGR--LRKHVLLRTVLEQAVVQGRLGD 654
           W QR V+++G+ +     H+G  +  L + V    ++  A   GRLGD
Sbjct: 439 WSQRLVVVKGIASALWYLHTGADQVVLHRDVKASNIMLDAEFHGRLGD 486


>At5g60300.1 68418.m07557 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 791 WIQRTVLLEGVCAFSMSTHSGTGR--LRKHVLLRTVLEQAVVQGRLGD 654
           W QR V+++G+ +     H+G  +  L + V    ++  A   GRLGD
Sbjct: 439 WSQRLVVVKGIASALWYLHTGADQVVLHRDVKASNIMLDAEFHGRLGD 486


>At5g41390.1 68418.m05029 hypothetical protein contains 1 predicted
           transmembrane domain;
          Length = 297

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 352 DASNCYKKCDANEAVSCLLKAIEIYTDMGRFT 447
           D   C+  C     VS LL+   +Y DM R+T
Sbjct: 32  DTPYCFFSCLCGPCVSYLLRKRALYNDMSRYT 63


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 304 LHLKAGVRHDAATNFVDASNCYKKCDANEAVSCLLKAIEIYTDMGRFTVAAKQHQNIAE 480
           L LKA  R  +    +D  +   KC  N  V+ +   + IY+  GR   A K    I +
Sbjct: 116 LVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPD 174


>At5g66200.1 68418.m08339 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 651

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 479 SVRDGVR*PRRAMQHYEQAADYFRGEESTSSANKCMLKLAQYAAQLEHYDKGHTDL 646
           S  +GV+ P    QH    +   +  E   SA KC +K A  A  L    KG++ +
Sbjct: 369 SQSNGVKQPSSVQQHQNSTSSASKTRELEDSATKCQIK-AMAARALWKLAKGNSTI 423


>At5g60320.1 68418.m07560 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 675

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 791 WIQRTVLLEGVCAFSMSTHSGTGR--LRKHVLLRTVLEQAVVQGRLGD 654
           W QR V+L+ + +     H+G  +  L + +    V+  +   GRLGD
Sbjct: 443 WSQRLVILKDIASALSYLHTGANQVVLHRDIKASNVMLDSEFNGRLGD 490


>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
            contains Pfam PF02138: Beige/BEACH domain; similar to LBA
            isoform gamma (GI:10257405) [Mus musculus]; similar to
            beige-like protein (CDC4L) - Homo sapiens; similar to
            Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
            protein homolog implicated in neuronal membrane traffic
            (AKAP550) (GI:11863541) [Drosophila melanogaster].
          Length = 1928

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 334  HHGEHQLSSGAVLHY 290
            H+G H  S+GAVLHY
Sbjct: 1755 HYGSHYSSAGAVLHY 1769


>At3g23020.1 68416.m02902 pentatricopeptide (PPR) repeat-containing
           protein low similarity to leaf protein [Ipomoea nil]
           GI:3107905; contains Pfam profile PF01535: PPR repeat
          Length = 842

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -1

Query: 495 TPSRTLRNVLVLFGSHSETTHIG-VDLDRFQETGHGLVSITFLVTVRSIYKIGGSIMANT 319
           TP +   N LV   + ++  H G   L++ +ETG+    I +   + S  K+G   MA  
Sbjct: 537 TPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEE 596

Query: 318 SFQ 310
            ++
Sbjct: 597 VYK 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,346,474
Number of Sequences: 28952
Number of extensions: 247474
Number of successful extensions: 702
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)