Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0275
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.4  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    27   4.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   5.5  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   5.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.5  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    25   9.5  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   9.5  

>SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -2

Query: 566 LCHLRPNRKRRECIRLSSFLFFYVDYVNSV-FWKQNSVQFISVSRLV 429
           LCH+R + K +E + + +FLF     +++V F  Q S++ +   R+V
Sbjct: 15  LCHVRIHFKTKEDLDIRAFLFSLQRELHAVAFLNQGSIRTLYEKRVV 61


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 735 SQMVPNRRSQPNITLPXPSTAIAFPEFLAIPTN 637
           S  +PN +S PN T P PS +      L +PTN
Sbjct: 137 SSAIPNVQSNPNNTAPFPSYS---SNSLQLPTN 166


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 721 WYHLRPDNVIPEPND 765
           W HL PD V+ E ND
Sbjct: 658 WIHLNPDQVVYEKND 672


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 216 NTSRRQHPDKNG 251
           N+ RRQHPD+NG
Sbjct: 86  NSCRRQHPDENG 97


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 735  SQMVPNRRSQPNITLPXPSTAIAFPEFLAIPTNSMGS*KPLSKTLT 598
            SQ+VP  +   N  +P P TA         PT S+ S   LS ++T
Sbjct: 1006 SQIVPPPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVT 1051


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 201 SNRPGNTSRR---QHPDKNGPYILREGNTIKIDNVRGQASAVDMKRNK 335
           SN+ G+  R+   +   K+  + LR    +  +NV+ + S  DM+R K
Sbjct: 189 SNKNGDKKRKHVSKSNSKHAKHELRTNRMLDGENVKSETSVTDMERVK 236


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 594  NMLKFCSKAFKSPLNLLVSLRIP 662
            N+L  C   +K+  +LLV+L+IP
Sbjct: 1084 NLLMICRVLYKAKSSLLVTLKIP 1106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,559,906
Number of Sequences: 5004
Number of extensions: 79543
Number of successful extensions: 238
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)