Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0275
         (804 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0)                      29   4.4  
SB_42647| Best HMM Match : DEAD (HMM E-Value=0.016)                    29   4.4  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           29   5.8  
SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9)                      29   5.8  
SB_4027| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.8  

>SB_54557| Best HMM Match : PHK_AB (HMM E-Value=0)
          Length = 863

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +2

Query: 476 KRCLHNRHKKK-EKRKVEYI-------PCAF-YLGVDDKDNIFYECDSKYVKVLLKG 619
           K  L ++++K  EKR++EY        P  F YL +D +    YEC + YVK+L  G
Sbjct: 185 KCVLEDKNRKYYEKRELEYFHGIENEWPIFFAYLAIDARFRHDYECANHYVKLLQDG 241


>SB_42647| Best HMM Match : DEAD (HMM E-Value=0.016)
          Length = 187

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 458 RCFVSRKRCLHNRHKK-KEKRKVEYIPCAFYLGVDDKDNIFYECDSKYVK 604
           RC    +R LH++H+K  EKR   Y P     G+    N++  C    ++
Sbjct: 9   RCVDDPRRVLHSKHQKLYEKRSKTYNPSPPPFGIRLYTNVYVICSRDVIQ 58


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 5   SVPPQERDHILKCFNSSSYLWSQLRHPRTAPSISMVIL--TQEQPYYPLKAYQQIW 166
           ++P +  DH+      S  LW QLR  R   S+S ++L      P+     YQ+++
Sbjct: 191 AIPSRRLDHLEPTGLLSEVLWLQLRPIRLPRSVSSIVLGVIYHPPHAKADDYQKLY 246


>SB_11327| Best HMM Match : Upf2 (HMM E-Value=5.9)
          Length = 564

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +3

Query: 315 VDMKRNKVYIASDDGLNELNSTDKANFVGLKDDDIV 422
           V+   + V  A+DD  NE+N+TD  N V   DD++V
Sbjct: 301 VNAADDNVVDATDDD-NEVNATDDDNVVNAADDNVV 335


>SB_4027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = -3

Query: 754 RESRCLVADGTKPSVAAQYHSPNXIYSYSFSGILSDTNKFNGLLKAFEQNFNIFGITFVK 575
           +E R LV+  +KP V   Y+  N  YSY+     SD N    LLK  E  F+   + F  
Sbjct: 133 KEERLLVSTASKPIVKLSYNRSNNKYSYTGQ---SDDN----LLKNIEL-FDKLSLRFNG 184

Query: 574 YIIFV 560
            I+F+
Sbjct: 185 RILFI 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,106,822
Number of Sequences: 59808
Number of extensions: 573622
Number of successful extensions: 1726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)