Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0275
         (804 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01150.1 68418.m00019 hypothetical protein contains Pfam prof...    30   2.1  
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ...    29   3.6  
At4g05080.1 68417.m00754 F-box family protein contains Pfam PF00...    28   6.3  
At3g13235.1 68416.m01666 ubiquitin family protein contains INTER...    28   6.3  
At1g26330.1 68414.m03211 hypothetical protein                          28   6.3  
At5g64540.1 68418.m08111 hypothetical protein                          28   8.3  

>At5g01150.1 68418.m00019 hypothetical protein contains Pfam profile
           PF05056: Protein of unknown function (DUF674)
          Length = 501

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +2

Query: 464 FVSRKRCLHNRHKKKEKRKVEYIPCAFYLGVDDKDNIFYECDSKYVKVLLKGFQEPIEFV 643
           + S+  CL  +  + E  KV  +    ++   D   +F EC  ++V++L      P+E  
Sbjct: 244 YKSQSPCLEKKEDEAEPEKV--VTLKAFVRKQDMKILFVECGEEFVELLFSFIAVPLE-- 299

Query: 644 GIAKNSGKAIAVDGIGRV 697
              + SG +I++  IG +
Sbjct: 300 SAWEISGSSISLGCIGNM 317


>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
           protein (TRH1) identical to tiny root hair 1 protein
           [Arabidopsis thaliana] gi|11181958|emb|CAC16137;
           KUP/HAK/KT Transporter family member, PMID:11500563;
           identical to cDNA mRNA for tiny root hair 1 protein
           (trh1) GI:11181957
          Length = 775

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 694 SPNXIYSYSFSGILSDTNKFNGLLKAFEQNF-NIFGITFVKYIIFVIYAQIESAGNVF 524
           SP  +Y  +F G L      + +  AF   F  I  ++ +KY++FV+ A     G +F
Sbjct: 29  SPLYVYKCTFYGGLRHHQTEDTIFGAFSLIFWTITLLSLIKYMVFVLSADDNGEGGIF 86


>At4g05080.1 68417.m00754 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 391

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 593 WNHIRKIYYLCHLRPNRKRRECIRLSSFLFFYVDYVNSVFWKQNSVQFISVS 438
           WN + K   LC  +P ++  +   LS +    + +  S  +K+N  +F+++S
Sbjct: 34  WNALSKDRILCKAKPKQQFHQGFMLSDYRLRSMRFNISGTFKENGEEFVNLS 85


>At3g13235.1 68416.m01666 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 414

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 363 NELNSTDKANFVGLKDDDIVQL 428
           NE+ ++DK + +G+KDDD++ +
Sbjct: 48  NEMGNSDKLSALGVKDDDLLMM 69


>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
 Frame = +3

Query: 213 GNTSRRQHPDKN----GPYILREGNTIKIDNVRGQASAVDMKRNKVYIASDDGLNE---- 368
           GN  +++H  +N      +   EGN   +D    +A +V  + +KVYI      N+    
Sbjct: 561 GNLLQKEHHSENKEPKSTFCSTEGNGFPVDTTPTEACSVKKENHKVYIRKRVSTNQHRIN 620

Query: 369 --LNSTDKANFVGLKDDDIVQLYKP 437
             L+S  K +     +DD ++   P
Sbjct: 621 RNLSSESKNSCRNTGEDDSIRNMSP 645


>At5g64540.1 68418.m08111 hypothetical protein 
          Length = 440

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/50 (38%), Positives = 21/50 (42%)
 Frame = +3

Query: 213 GNTSRRQHPDKNGPYILREGNTIKIDNVRGQASAVDMKRNKVYIASDDGL 362
           G  +  Q PD   P   RE  T K       A    M RNK +  SDDGL
Sbjct: 349 GLETMTQKPDLASPSAGRETETQKPGLALPSAGLRTMTRNKDWSPSDDGL 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,461,576
Number of Sequences: 28952
Number of extensions: 406784
Number of successful extensions: 1212
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)