Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0274
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    26   5.2  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   6.9  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   6.9  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   6.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.1  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    25   9.1  

>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 660 VFLK*LIKSKKQKWAKFNPSLVGKIGHTPNFGMEK 764
           VFL    KS  Q W +F+  +V    HT N  +EK
Sbjct: 206 VFLSAKRKSNYQIWLEFSELVVQHPDHTQNIDVEK 240


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 435 HVFRNSRIILTRIRNFHI---LLYSTDTIYIYIQ*TPVVRRSGHTHFFF 572
           HVFRN   ++ ++   H+   LL +  T+Y Y++ T  +      + FF
Sbjct: 759 HVFRNFLAVVPQVLRSHLLSHLLNNLFTVYGYVEPTKPLINENIANLFF 807


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 30  ALSQVTPGCCAGSPPQSLVLIARFSHYC 113
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 156 INETQNKRLTNI*KYNNERNARSVRGFVADCRRSSPASPAITRPRVG 16
           +N  Q  R+T+   +N +  + +   FV DC   +  SP +  P++G
Sbjct: 367 VNSMQKMRVTSPVDHNEQPESSTAEMFV-DCTIEASQSPLLHIPKLG 412


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 357 IPSISEWTTYILIVKVNYIDLLNYRIHVFRNSRI 458
           +  +++W  Y  +    Y+DL  Y    ++NS+I
Sbjct: 669 VAPVTDWRLYDSVYTERYMDLPQYNKEGYKNSQI 702


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 124 IC*SFVLCLVNLLIICSVSCCRNIELFLVLFRL 222
           +C  F   L+ +L ICS+ C   +  FLV F L
Sbjct: 1   MCPLFKTYLLYILKICSIPCLAYVVNFLVCFVL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,751
Number of Sequences: 5004
Number of extensions: 67752
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)