Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0274
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1157 - 24419157-24419948                                         25   3.0  
07_01_1055 - 9253936-9254130,9254271-9254483,9254588-9254758,925...    29   4.1  
08_02_1014 - 23586552-23587224,23587402-23587463,23587735-235879...    29   5.4  

>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 25.0 bits (52), Expect(2) = 3.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 428 PHPRVPQLPDH 460
           PHP VP+LP H
Sbjct: 196 PHPAVPELPKH 206



 Score = 23.0 bits (47), Expect(2) = 3.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 425 LPHPRVPQLP 454
           LPHP VP++P
Sbjct: 146 LPHPAVPEIP 155


>07_01_1055 -
           9253936-9254130,9254271-9254483,9254588-9254758,
           9255743-9255859,9257021-9257186,9258885-9258934,
           9259095-9259268
          Length = 361

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 357 IPSISEWTTYILIVKVNYIDLLNYRIHVFRNSRIILT-RIRNFHILL 494
           +PSI   T   ++ + N   L+  R  V R  R ILT R RNF+I L
Sbjct: 201 LPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERARNFNIAL 247


>08_02_1014 -
           23586552-23587224,23587402-23587463,23587735-23587950,
           23588125-23588209,23589232-23589389,23589505-23589625,
           23590081-23590243,23590330-23590415,23590660-23590742,
           23590816-23591677,23593266-23593693
          Length = 978

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 627 HKIHYQAD*LLFIFSDFLRKKSVCVRSDARLE 532
           H++H +   +  IF  +LR K  C R DA  E
Sbjct: 561 HRLHEETTLMQLIFGGYLRSKIRCTRCDATSE 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,393,070
Number of Sequences: 37544
Number of extensions: 364222
Number of successful extensions: 777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)