Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0274
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   0.78 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   0.78 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 265 NPNGSGHKQNDVGKLNETIREIV 197
           NPN   H++ D+G  ++TI  +V
Sbjct: 579 NPNLVAHREEDLGSESKTINAVV 601


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 265 NPNGSGHKQNDVGKLNETIREIV 197
           NPN   H++ D+G  ++TI  +V
Sbjct: 547 NPNLVAHREEDLGSESKTINAVV 569


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 108 NERNARSVRGFVADCRRSSPASPAITRPRVGS 13
           N  +A+    F   CR  SP++P+ITR  + S
Sbjct: 317 NVMSAKYRNAFKETCR-CSPSNPSITRTGLSS 347


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/18 (55%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = -1

Query: 531 FTGYKYK-LCQLNTVKYG 481
           F  Y Y  +CQLN V YG
Sbjct: 498 FDTYTYDTICQLNIVHYG 515


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 160 LIICSVSCCRNIELFLVLFRLI 225
           LI+C+V+ C ++   +V+F ++
Sbjct: 316 LIVCTVNSCTSMLSGIVIFSVV 337


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 160 LIICSVSCCRNIELFLVLFRLI 225
           LI+C+V+ C ++   +V+F ++
Sbjct: 369 LIVCTVNSCTSMLSGIVIFSVV 390


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 118 SYIC*SFVLCLVNLLIICSVSCCRNIELFLVLFRLIYRHR 237
           S++    +LC  ++L +C++S  R +    V   LIY  R
Sbjct: 113 SWVSLDILLCTASILSLCAISIDRYL---AVTQPLIYSRR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,107
Number of Sequences: 438
Number of extensions: 4833
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)