Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0274
         (774 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20530.1 68415.m02398 prohibitin, putative similar to SP|P241...    30   2.0  
At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2...    28   7.9  

>At2g20530.1 68415.m02398 prohibitin, putative similar to SP|P24142
           Prohibitin (B-cell receptor associated protein 32) (BAP
           32) {Rattus norvegicus}; contains Pfam profile PF01145:
           SPFH domain / Band 7 family
          Length = 286

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 357 IPSISEWTTYILIVKVNYIDLLNYRIHVFRNSRIILT-RIRNFHILL 494
           +PSI   T   ++ + N   L+  R  V R  R ILT R  NFHI L
Sbjct: 126 LPSIIHETLKAVVAQYNASQLITQRESVSREIRKILTLRAANFHIAL 172


>At3g05030.1 68416.m00546 sodium proton exchanger, putative (NHX2)
           similar to sodium proton exchanger Nhx1 GB:AAD16946
           [Arabidopsis thaliana]; Member of The Monovalent
           Cation:Proton Antiporter (CPA1) Family, PMID:11500563
          Length = 546

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = +3

Query: 456 IILTRIRNFHILLYSTDTIYIYIQ*TPVVRRSG 554
           ++++R +N H+L++S D  +IY+   P++  +G
Sbjct: 66  LLISRGKNSHLLVFSEDLFFIYLL-PPIIFNAG 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,620
Number of Sequences: 28952
Number of extensions: 320022
Number of successful extensions: 607
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)