Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0273
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   1.6  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   3.8  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   5.0  
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    25   6.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 279 RGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 136
           R P+P H   +R P   E S     RS +PR+R++   P    RSP +
Sbjct: 116 RSPSP-HEARSRSPYNDERSD---RRSMSPRYRSRSRSPDGRSRSPDY 159


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 306 RXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPS 169
           R +  Q++   P P  SG   +P P E     ++ S  P    KPS
Sbjct: 231 RKEKSQENKPKPTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKPS 276


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 357 GVAGLAAPPVTLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELS 220
           GV  +  P  T  + QS   G     R P+PR     R P P+ LS
Sbjct: 324 GVGSVPLPAPT--SSQSLRLGSLHRSRSPSPRSGRPRRSPSPSHLS 367


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -3

Query: 321 RAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRH 184
           R    + +G   HH+G   +  G    PKP + S    +  E P+H
Sbjct: 144 RRKHGKCKGKGKHHKGKHAKGKGKKSHPKPEDDSVFFDD--ERPKH 187


>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 441 SALLAKELELDHSRALSKSRLSSWLGVX--GVAGLAAPPVTLRAVQSRXQGHQDHHRGPA 268
           + +  KE  ++   +L +    ++ G+   G + +    + +R +QS  +G  D    P 
Sbjct: 339 NVITPKEKVVEALNSLKEHGFINYFGLQRFGTSSVGTHTIGVRLLQSDWKGAVDLILSPR 398

Query: 267 PRHSGNTR 244
           P H+G+ +
Sbjct: 399 PEHTGSVK 406


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/70 (20%), Positives = 25/70 (35%)
 Frame = -3

Query: 339  APPVTLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPV 160
            AP     +V +        H   +P  + ++        ++  R +S+  RH    S   
Sbjct: 1241 APSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRK 1300

Query: 159  WSRRSPHHFH 130
             S+   HH H
Sbjct: 1301 SSKSGEHHHH 1310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,599
Number of Sequences: 5004
Number of extensions: 34431
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)