Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0273
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0665 - 18506221-18506271,18506331-18506401,18507097-185071... 31 0.55
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28... 30 1.3
03_06_0034 + 31197846-31198417,31198562-31198987,31199074-311993... 29 2.9
05_05_0017 + 21546434-21546841 29 3.9
12_02_1275 - 27482784-27483272 28 5.1
06_03_0685 - 23499779-23500204 28 5.1
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 5.1
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 28 5.1
10_08_1037 - 22477358-22478752 28 6.8
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 6.8
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 27 8.9
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 27 8.9
>04_03_0665 -
18506221-18506271,18506331-18506401,18507097-18507169,
18507476-18507805
Length = 174
Score = 31.5 bits (68), Expect = 0.55
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 131 WKWCGLRRDQTGREG 175
W WCGLRR + GR G
Sbjct: 65 WMWCGLRRSKAGRRG 79
>05_01_0041 +
281427-281549,281671-281730,281822-281868,282013-282089,
285368-285440,286193-286281,286665-286711,286805-286885,
287011-287179,287381-287600,287679-287744,288194-288310,
288591-288628,288935-289032
Length = 434
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = -3
Query: 342 AAPPVTLRAVQSRXQGHQDHHRGPAP--RHSGNTRRPKPT-ELSACCRERSETPRHRNKP 172
A P+ SR G R P+P R + R P + + R RS PR R P
Sbjct: 294 APSPIRHGGTPSRRPGSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTP 353
Query: 171 SRPVWS 154
R +WS
Sbjct: 354 PRRMWS 359
>03_06_0034 +
31197846-31198417,31198562-31198987,31199074-31199386,
31199510-31199560
Length = 453
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 226 AERLLPGALRDAPSPE*TFSTCLVSTESTPF 134
++RL+ ALR PSP F++ L +TPF
Sbjct: 39 SQRLVYAALRSLPSPRALFASLLSQLSATPF 69
>05_05_0017 + 21546434-21546841
Length = 135
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/77 (20%), Positives = 27/77 (35%)
Frame = -3
Query: 399 ALSKSRLSSWLGVXGVAGLAAPPVTLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELS 220
++S++ L + A AA + + A + HH G +P P P
Sbjct: 5 SMSRAHLLFLCSLAAAAAAAAGALAVPAAEVDWARQLRHHHGASPASDAPAPSPAPLSTP 64
Query: 219 ACCRERSETPRHRNKPS 169
CR P + P+
Sbjct: 65 ELCRPGEPVPAPSSSPA 81
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 128 QWKWCGLRRDQTGREG 175
+W W GLRR +TGR G
Sbjct: 144 RWVWRGLRRTKTGRRG 159
>06_03_0685 - 23499779-23500204
Length = 141
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 148 PSRPNRSRRFIPVTGRL*ALPAASAQLCRLRTPSVSAVPG 267
P R R RR+ P GR+ LP ++CR R P + G
Sbjct: 42 PPRGGRIRRWPPRRGRIRGLPPLGGRICR-RPPRGGRIHG 80
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 270 APRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRS 145
AP+ S RP P S + R TP + +PS PV +R++
Sbjct: 122 APKQSIAASRPVPARSSTPVKTRPSTPT-KTRPSTPVRTRQT 162
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = -3
Query: 354 VAGLAAPPVTLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNK 175
V G AA PV R Q D R P + + N + KP + S++ +H+
Sbjct: 56 VNGRAALPVVNR--QKAAAAAADKCRKPIKQRNENNKAAKPEVIVIS----SDSEKHKKN 109
Query: 174 PSRPVWSRRSP 142
P++ SRR+P
Sbjct: 110 PAQRAASRRAP 120
>10_08_1037 - 22477358-22478752
Length = 464
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/64 (32%), Positives = 26/64 (40%)
Frame = -3
Query: 351 AGLAAPPVTLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKP 172
A AA VT A + HQ P PRHS R P S P+H++ P
Sbjct: 201 AAAAAAAVTPAAAAAAGLQHQQE---PVPRHSPAAHRGDPLPAS------PPQPQHQHHP 251
Query: 171 SRPV 160
RP+
Sbjct: 252 HRPL 255
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 461 LGHHEDSRRCWPKSWSLTIAGHLASRD 381
L D + WP W ++ AGH+++ D
Sbjct: 76 LQRRADCKDTWPGQWDISSAGHISAGD 102
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 128 QWKWCGLRRDQTGREG 175
+W W GLRR +TGR G
Sbjct: 558 RWVWRGLRRIKTGRRG 573
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 128 QWKWCGLRRDQTGREG 175
+W+W GLRR + GR G
Sbjct: 64 RWEWHGLRRTKAGRRG 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,354
Number of Sequences: 37544
Number of extensions: 301579
Number of successful extensions: 1012
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -