Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0273
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.026
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)            31   0.98 
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  30   1.7  
SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)                  29   2.3  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)                   29   3.0  
SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       28   5.2  
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)                 28   5.2  
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)                27   9.1  
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)           27   9.1  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 35.9 bits (79), Expect = 0.026
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 312 QSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHF 133
           +SR +  +   R  +PR    +R P P   S   R RS +PR R+  SR    RR     
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRHRSRS 284

Query: 132 H 130
           H
Sbjct: 285 H 285


>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
          Length = 1850

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 327 TLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRP-VWSR 151
           T   V++  + +Q + R     H+  +  P   +L   C   S TP   N+P+ P V+  
Sbjct: 768 TAEEVENELEAYQSYIRSSGEDHAPESPPPLRKQLIPICNSSSSTPVDENEPTFPDVFEP 827

Query: 150 RSP 142
            SP
Sbjct: 828 PSP 830


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 279 RGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 139
           R P  R    +R P+    S+ CR R    R R+  SR     RSP+
Sbjct: 293 RSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPY 339


>SB_30512| Best HMM Match : GLTT (HMM E-Value=0.00058)
          Length = 1083

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 390 KSRLSSWLGVXGVAGLAAPPVTLRAVQSRXQGHQDHHRGPAPRH 259
           +SRL  +  +  V GL  PP  L ++  R +   D + G APRH
Sbjct: 662 RSRLQDY--ILAVQGLL-PPEALESISGREKAAGDSNEGDAPRH 702


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 354 VAGLAAPPVTLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNK 175
           V G+A  P+ LR  + + Q +    R            PK    + C R+R E  +H++K
Sbjct: 151 VQGIAPLPIKLRPSEGKAQANPKRARTAVVSKGKAQANPKRARTAVCKRKR-ELAKHKHK 209

Query: 174 PSR 166
             R
Sbjct: 210 RKR 212


>SB_44680| Best HMM Match : Gemini_V1 (HMM E-Value=4)
          Length = 248

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = -3

Query: 294 HQDHHRGPAPRHSGNTRRPKP-----TELSACCRERSETPRHRN 178
           H+D  RGP  RH G TR   P       L     E+  T RHR+
Sbjct: 194 HRDAARGPKERHDGRTRAVHPDIKIRISLFTDWFEKKATARHRD 237


>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 438 ALLAKELELDHSRALSKSRLSSWLGVXGVAGL 343
           ALLAK++  +H R L  S    WL V G  GL
Sbjct: 688 ALLAKQV-YEHERRLQSSATRRWLAVSGGIGL 718


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 273 PAPRHSGNTRRPKPTELSACCRERSETPRH 184
           P    +GN+RR  P EL+      +E+P+H
Sbjct: 2   PVRTRAGNSRRRVPKELNGVSHSANESPQH 31


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 312 QSRXQGHQDHHRGPAPRHSGN--TRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPH 139
           QS+   + +    P P+ S +    +P+P   S   R    +     KP  P+ SR++P 
Sbjct: 457 QSQNTAYPESPDTPQPQASSSFLPEQPRPRSHSQTSRRSRASTSESRKPRDPLGSRQAPG 516

Query: 138 H 136
           H
Sbjct: 517 H 517


>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
          Length = 475

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 414 LDHSRALSKSR-LSSWLGVXGVAGLAAPPVTLRAVQSRXQGHQDHHRGPAPRHSGNT 247
           ++ +  L KSR L +W+   G A  A+PPVT        +G     + P    + NT
Sbjct: 233 VEDAEMLKKSRNLPAWMATGGQATTASPPVTKPVGGPVKRGRGRPRKNPDAPSNNNT 289


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -3

Query: 282 HRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 136
           H  P P HS + R    T  +A     S  P HR  P  P ++   P+H
Sbjct: 462 HLAPTPHHSSD-RPHHATSYNA----PSGMPTHREPPPHPSFASHQPYH 505


>SB_9087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 246 ECFRCAWAPGLCGGPDVPXHGS 311
           E  R  W+  LCGGPD+   GS
Sbjct: 107 EITRSWWSSRLCGGPDINDDGS 128


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 333  PVTLRAVQSRXQGHQDHHRGPAPRHSGNTRRPKPTELSACCRERSETPRHRNKPS 169
            P T+  V+   +  +D  +GP  R      R    E+    R+RS  P +R   S
Sbjct: 1090 PYTIALVERLEEVERDGRQGPDSRRRQTHERRGGKEVREAIRDRSSQPDYRRADS 1144


>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
          Length = 156

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 245 RVFPLCLGAGPLWWS*CPXSRLC-TARRVTGGAASPATPXTP 367
           RV P    A P+  +  P +R+  TA RVT  AA PA P TP
Sbjct: 75  RVTPTAAPAAPVTPTAAPAARVTPTAARVTPTAA-PAAPVTP 115


>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
          Length = 404

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 245 RVFPLCLGAGPLWWS*CPXSRLC-TARRVTGGAASPATPXTP 367
           RV P    A P+  +  P +R+  TA RVT  AA PA P TP
Sbjct: 232 RVTPTAAPAAPVTPTAAPAARVTPTAARVTPTAA-PAAPVTP 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,202,170
Number of Sequences: 59808
Number of extensions: 318346
Number of successful extensions: 969
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)